Gene
nop56
- ID
- ZDB-GENE-040109-1
- Name
- NOP56 ribonucleoprotein homolog
- Symbol
- nop56 Nomenclature History
- Previous Names
-
- nol5a
- NOP56 (1)
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Description
- Predicted to have snoRNA binding activity. Involved in heart development. Predicted to localize to box C/D snoRNP complex and small-subunit processome. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 36. Is expressed in midbrain. Orthologous to human NOP56 (NOP56 ribonucleoprotein).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 17 figures from 4 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| spinocerebellar ataxia type 36 | Alliance | Spinocerebellar ataxia 36 | 614153 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | Nop, C-terminal domain | Nop domain | Nop domain superfamily | NOSIC | Nucleolar protein 58/56, N-terminal | Nucleolar protein Nop56/Nop58 |
|---|---|---|---|---|---|---|---|
|
UniProtKB:Q6DRE5
|
548 | ||||||
|
UniProtKB:A0A8M1P758
|
366 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
nop56-201
(1)
|
Ensembl | 836 nt | ||
| aberrant processed transcript |
nop56-202
(1)
|
Ensembl | 1,134 nt | ||
| mRNA |
nop56-203
(1)
|
Ensembl | 2,039 nt | ||
| ncRNA |
nop56-003
(1)
|
Ensembl | 826 nt | ||
| ncRNA |
nop56-004
(1)
|
Ensembl | 794 nt | ||
| ncRNA |
nop56-005
(1)
|
Ensembl | 799 nt | ||
| ncRNA |
nop56-007
(1)
|
Ensembl | 1,014 nt |
Interactions and Pathways
No data available
Plasmids
No data available