Genomic Feature

pr05

ID
ZDB-ALT-180515-3
Name
pr05
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Burdine Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 17
Variants
Variant Type
Small Deletion
Variant Location
Chr 17: 4245057 - 4245076 (GRCz11) (1) Details
Nucleotide change
GATGTTTCCTCGTACCCCAT/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
20 bp deleted at position 218 in Exon 1 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CAGCAAAATGAATAATAATAAGAATAAAAGGATGTTTCATCCAATACACGCGTGTGTAACTGTGAATCAACTTGAATCGTGACACCAATAAAAGGCATGCAACTTGCATTTCTATGGTAACCTTGTGCACATAAATTTAAACATTCCTTGTGCACGTAAATGTTTTAAATTTAAACAATTGAGTGTTGATGGTGAAAAAAGAAATTCTATAAATTGTCCTTTCTTAATACATGGACTTGCTCAACATGTGATGGCTTCATATATATCCCCAATGACTCTTTATAAAAATGCATTTTCCAAATAAAATAAATAAATAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATGTAAACATTTTATTATAAATAAATAAATTATAAATAGTCACTTTTTAAGTGTGGTCCGTAAGATCCTCACCTTGATCCTGCATAAACCTCAC
GATGTTTCCTCGTACCCCAT/- ATTCAGACACCACACATGGGTCATTAACGGTCTGTTTGCTGGCCTGTTTAAAGATTTTCCACATCTGTGATGGCACTGCGGCATGATGCGATGGTTTGGGTCGACTCCAGAGTCCCATAGAGCTCAAAAACAGCTTTTCTTGCACAAGACCATCATCTTCTGCAGGAGAACAGAGACTGAGGGTCAGAAGACAGGCTCTGAGGAGGACCAAGAACATTATTAGATTATAAAAACAGAGCAAAGAACACACACAGGCTTATAAATGCCAGCTGATCAGCTTCACATGGCCAGAAATCCACATCTGCAAGCTGATTGGTGGAGATAAAGGAGTTGATTGATCAGCAGCAGGGGGTGGTGTCATTCACATGCAAATCAGCTCTTTGATGTTTATAGGCATCAGGTTGCCTGGCAGACACAGCTCTGATTTATTGCATGAAGATTTTGGGATCTGCAATGATTTAATAATTAAAATGAGTAGGGGAAAATGCTAAAAATGACTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
gdf3pr05/pr05Homozygous♀-/-Fig. 1 with image from Pelliccia et al., 20172 figures with image from Pelliccia et al., 2017
gdf3pr05/pr05Homozygous♀+/- ♂+/-Fig. 1 with image from Pelliccia et al., 2017
gdf3pr05/+Heterozygous♀-/- ♂+/+Fig. 2 with image from Pelliccia et al., 2017
gdf3pr05/+HeterozygousUnknownFig. 2 with image from Pelliccia et al., 2017
gdf3pr05Unknown♀-/-Fig. 1 with image from Pelliccia et al., 2017
gdf3pr05/pr05 + MO1-ndr2 + MO4-ndr1ComplexFig. 3 with image from Pelliccia et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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