Transcript

si:rp71-3c13.3-001

ID

ZDB-TSCRIPT-090929-8

Name

si:rp71-3c13.3-001 Nomenclature History

Previous Names

ottdart00000001383
rp71-3c13.3-001

Transcript Type

lincRNA

Annotation Status

Annotation Method

Ensembl

Associated With Genes

si:rp71-3c13.3 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

RNAcentral:URS0000A7BCA0 (1)

Note

None

Sequence

ENSDART00000142990 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000142990.3|gene_biotype:lincRNA|ENSDARG00000092341.4 transcript_biotype:lincRNA  ncrna chromosome:GRCz11:4:15135239:15139790:-1
CTATTTATCCGCATTACAAATACAGTAACGTTAGTTATCG
CTGAACTTTAGTGGCGCTTGTTGTGACGAAAATATGCGTG
TTTTTTTTTTAAGATTTACTTTTATGAGATCACCTGCAGG
AAGCAGGTGAGGAGATCAGCTGTGATTCGGTCCGGCGTCA
GCGAGCGGCTCATGACCAGACCAGTCGTTGTTTTCTCCAT
GATCGCCGGGGCAGCAGCAGTTTTAACCCGCCGAGGCTTT
TAGAACATTATAAAGCAGTTTCAGCTCAAAATGGACCCGT
GAGTGTCACTACCAGTTTGTGAGCTGATATGCAGTGGAAA
TTGACATCCAGAAGGAAGTCATAGAGGAAACACCAGCTGA
TGCAAGTGCTGCAGAAGAATTCAATCGAATATCAGGAAGA
AATGTGAGATCCAAGTTCTACGCTGCATTGGACACACACT
GCTCGTTTGATTGAAATAAAAAAAAAAAAAAACAGGAGAA
AATTGCAGAAGAAAACTAGAAGAAATTTTCAACATGTTAA
TTCAAAGGTCATCTGGCAGCAGTTTTCCGGGGTCTTTCAG
TCCTTTAGAGGGATGAGTCTAAAGAAATTTTCAGGATGTG
TTTTGATGTAATTGTAGAGTCGGACTTCAGTGCAGAAGAT
GTTGGCCTGCTGACTGTCGTGTGTGAAGATGTCTAAAGAA
CCTCATTATGGATGCAATGTGGGCCTTTATACTGGAAGGA
AAAGTGGTTATGGACTTTGCCACATGCAGTATGTCTCTTT
TTTTGCTTTGATTTACACACTGAATTCGGACTACCCAAAG
ACTTTGAGCAATGCATTTGAATTTGTTCAATGTGTGTTGC
TTTTGCTGGGAGGGAAGCGTAATGTGTTTTATTCGGCGAG
TGCCTATATACTGCTGTGCTTTATGTTTAAAGGTTCAGGT
ATAATGGCATGTTTAATTACAAAGTGTTGCTTTTTAACAT
GTTGCTGTTTGCAGTGTTACATTTAGGACTGCAGCATTTT
GGTGTTTAAAACACTTTTTTTTTTTTTACCAAAAAAGTGT
ATTGTGATTTATAGGGTTGTCAAAAGTATTGAGTTTGGTA
CC

OTTDART00000001383 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000001383|OTTDARG00000001283|ZDB-GENE-030616-68 si:rp71-3c13.3|no_translation RP71-3C13.3-001 LG_ AL590150.2 Danio rerio lincRNA NOVEL, 1082 bp
CTATTTATCCGCATTACAAATACAGTAACGTTAGTTATCG
CTGAACTTTAGTGGCGCTTGTTGTGACGAAAATATGCGTG
TTTTTTTTTTAAGATTTACTTTTATGAGATCACCTGCAGG
AAGCAGGTGAGGAGATCAGCTGTGATTCGGTCCGGCGTCA
GCGAGCGGCTCATGACCAGACCAGTCGTTGTTTTCTCCAT
GATCGCCGGGGCAGCAGCAGTTTTAACCCGCCGAGGCTTT
TAGAACATTATAAAGCAGTTTCAGCTCAAAATGGACCCGT
GAGTGTCACTACCAGTTTGTGAGCTGATATGCAGTGGAAA
TTGACATCCAGAAGGAAGTCATAGAGGAAACACCAGCTGA
TGCAAGTGCTGCAGAAGAATTCAATCGAATATCAGGAAGA
AATGTGAGATCCAAGTTCTACGCTGCATTGGACACACACT
GCTCGTTTGATTGAAATAAAAAAAAAAAAAAACAGGAGAA
AATTGCAGAAGAAAACTAGAAGAAATTTTCAACATGTTAA
TTCAAAGGTCATCTGGCAGCAGTTTTCCGGGGTCTTTCAG
TCCTTTAGAGGGATGAGTCTAAAGAAATTTTCAGGATGTG
TTTTGATGTAATTGTAGAGTCGGACTTCAGTGCAGAAGAT
GTTGGCCTGCTGACTGTCGTGTGTGAAGATGTCTAAAGAA
CCTCATTATGGATGCAATGTGGGCCTTTATACTGGAAGGA
AAAGTGGTTATGGACTTTGCCACATGCAGTATGTCTCTTT
TTTTGCTTTGATTTACACACTGAATTCGGACTACCCAAAG
ACTTTGAGCAATGCATTTGAATTTGTTCAATGTGTGTTGC
TTTTGCTGGGAGGGAAGCGTAATGTGTTTTATTCGGCGAG
TGCCTATATACTGCTGTGCTTTATGTTTAAAGGTTCAGGT
ATAATGGCATGTTTAATTACAAAGTGTTGCTTTTTAACAT
GTTGCTGTTTGCAGTGTTACATTTAGGACTGCAGCATTTT
GGTGTTTAAAACACTTTTTTTTTTTTTACCAAAAAAGTGT
ATTGTGATTTATAGGGTTGTCAAAAGTATTGAGTTTGGTA
CC

Related Transcripts

Transcripts related to si:rp71-3c13.3

Type	Name	Annotation Method	Length (nt)	Analysis
lincRNA	ottdart00000058586 (1) Ensembl	Ensembl	498 nt	Select Tool
lincRNA	si:rp71-3c13.3-001	Ensembl	1,082 nt
lincRNA	si:rp71-3c13.3-002 (1) Ensembl	Ensembl	667 nt	Select Tool
ncRNA	ottdart00000002276 (1)	Havana	779 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	ottdart00000002277 (1)	Havana	1,401 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	si:rp71-3c13.3-003 (1)	Havana	1,524 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations