ZFIN ID: ZDB-GENE-980526-26

Mapping Details

Gene Name: muscle segment homeobox 1b
Symbol: msx1b
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 1 49,352,900 - 49,355,313 GRCz11
Ensembl 1 49,352,900 - 49,355,313 GRCz11
Vega 1 48,708,480 - 48,710,893 GRCv10
NCBI Map Viewer 1 49,352,935 - 49,355,307 GRCz11
UCSC 1 - GRCz11
Mapped Clones containing msx1b
DKEYP-80C12 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa39680 1 49,354,462 GRCz11 Busch-Nentwich et al., 2013
1 48,710,042 GRCz10 Busch-Nentwich et al., 2013
1 49,860,861 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 145.6 cM msxb Mother of Pearl (MOP) Postlethwait, John H. Data
1 443.28 cR msxB Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
1 455.11 cR msxb Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
1 6043.0 cR msxb Goodfellow T51 (T51) Geisler, Robert Data
1 74.9 cM msxb Heat Shock (HS) Woods, Ian G. Data
1 91.86 cM msxb Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
lef1 GENE 1 Phillips et al., 2006
Df(Chr01:lef1,msxb)x8 Feature 1 Phillips et al., 2006

OTHER MAPPING INFORMATION
Chr 1 Phillips et al., 2006
Markers Encoded by msx1b
fk04h02 Chr: 1 Details
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 421 MspI 36.0
Forward Primer TATTTAACGGACCCGTGTCC
Reverse Primer ACGGATAACCTCCGTGTCAG