ZFIN ID: ZDB-GENE-000823-1

Mapping Details

Gene Name: homeobox A9a
Symbol: hoxa9a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 19 19,747,430 - 19,752,145 GRCz11
Ensembl 19 19,747,430 - 19,752,145 GRCz11
Vega 19 20,174,479 - 20,179,194 GRCv10
Vega 19 20,177,272 - 20,189,280 GRCv10
NCBI Map Viewer 19 19,750,101 - 19,752,139 GRCz11
UCSC 19 - GRCz11
Mapped Clones containing hoxa9a
DKEY-25E11 Chr: 19 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa18147 19 19,750,583 GRCz11 Busch-Nentwich et al., 2013
19 20,177,632 GRCz10 Busch-Nentwich et al., 2013
19 19,216,328 Zv9 Busch-Nentwich et al., 2013
la028009Tg 19 19,216,215 - 19,216,225 Zv9

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
19 204.09 cR Hoxx9 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxa3a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa4a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa1a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa11a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa5a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
evx1 GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa13a GENE 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa10ap GENEP 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa11a GENE 19 He et al., 2011 He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the  ...
mir196a-2 MIRNAG 19 He et al., 2011 He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the  ...
mir196a-2 MIRNAG 19 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1a near hoxa9a.

OTHER MAPPING INFORMATION
Chr 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1,  ...
Chr 19 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1a near hoxa9a.
Chr 19 He et al., 2011 He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the hoxa11a and hox9a genes on  ...
Markers Encoded by hoxa9a
fd07f09 Chr: 19 Details