Mapping Details

Genome Browser Chr Position Assembly ZFIN JBrowse 25 36,488,164 - 36,492,779 GRCz11 Ensembl 25 36,488,164 - 36,492,779 GRCz11 Vega 25 35,901,116 - 35,905,788 GRCv10 NCBI Map Viewer 25 36,488,164 - 36,492,790 GRCz11 UCSC 25 - GRCz11

Mapped Clones containing irx3b
CH73-140F21	Chr: 25 Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
25	88.0 cM	irx3b	Heat Shock (HS)	Woods, Ian G.	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
sall1b	GENE	25		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ... Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b and sall1b genes to contigs on LG 25. Using contig data and STS/EST mapping data, these genes were colocalized the same chromosomal position on LG 25.
amfra	GENE	25		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ... Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b and sall1b genes to contigs on LG 25. Using contig data and STS/EST mapping data, these genes were colocalized the same chromosomal position on LG 25.
irx5b	GENE	25		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ... Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b and sall1b genes to contigs on LG 25. Using contig data and STS/EST mapping data, these genes were colocalized the same chromosomal position on LG 25.
rbl2	GENE	25		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ... Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b and sall1b genes to contigs on LG 25. Using contig data and STS/EST mapping data, these genes were colocalized the same chromosomal position on LG 25.
z1213	SSLP	25		Feijoo et al., 2004	Feijoo et al. (2004 Dev. Genes Evol. 214(6):277-284) report mapping irx3b to LG25 using the T51 radiation hybrid panel.
sall1b	GENE	25		Titus et al., 2006	Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS  ... Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST analyses with genome sequence showed that fancc mapped between near the pcoln3 gene. Also, sall1b, irx3b and amfr mapped to the same location as fanca.
chmp1a	GENE	25		Titus et al., 2006	Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS  ... Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST analyses with genome sequence showed that fancc mapped between near the pcoln3 gene. Also, sall1b, irx3b and amfr mapped to the same location as fanca.
amfra	GENE	25		Titus et al., 2006	Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS  ... Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST analyses with genome sequence showed that fancc mapped between near the pcoln3 gene. Also, sall1b, irx3b and amfr mapped to the same location as fanca.
fanca	GENE	25		Titus et al., 2006	Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS  ... Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST analyses with genome sequence showed that fancc mapped between near the pcoln3 gene. Also, sall1b, irx3b and amfr mapped to the same location as fanca.

OTHER MAPPING INFORMATION

Chr 25 Titus et al., 2006 Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST  ... Titus et al (Gene 371, 211-223) mapped the fanca gene to LG25 using the HS mapping panel. BLAST analyses with genome sequence showed that fancc mapped between near the pcoln3 gene. Also, sall1b, irx3b and amfr mapped to the same location as fanca.   Chr 25 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b  ... Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx3b irx5b and sall1b genes to contigs on LG 25. Using contig data and STS/EST mapping data, these genes were colocalized the same chromosomal position on LG 25.

Markers Encoded by irx3b
fb36a07 Chr: 25 Details