ZFIN ID: ZDB-GENE-990714-15

ZFIN ID: ZDB-GENE-990714-15

Mapping Details

Gene Name:	DNA (cytosine-5-)-methyltransferase 1
Symbol:	dnmt1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	3	54,591,218 - 54,607,166	GRCz11
Ensembl	3	54,591,218 - 54,607,166	GRCz11
Vega	3	54,336,616 - 54,352,585	GRCv10
NCBI Map Viewer	3	54,591,218 - 54,607,216	GRCz11
UCSC	3	-	GRCz11

Mapped Clones containing dnmt1
CH73-160J1	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
rj794	3	54,597,721	GRCz11	Liu et al., 2015
s872	3	54,591,701 - 54,591,702	GRCz11	Anderson et al., 2009
s904	3	54,600,854	GRCz11	Anderson et al., 2009
sa16282	3	54,601,929	GRCz11	Busch-Nentwich et al., 2013
	3	54,347,327	GRCz10	Busch-Nentwich et al., 2013
	3	55,453,601	Zv9	Busch-Nentwich et al., 2013
sa20150	3	54,597,933	GRCz11	Busch-Nentwich et al., 2013
	3	54,343,331	GRCz10	Busch-Nentwich et al., 2013
	3	55,449,605	Zv9	Busch-Nentwich et al., 2013
sa40171	3	54,596,372	GRCz11	Busch-Nentwich et al., 2013
	3	54,341,770	GRCz10	Busch-Nentwich et al., 2013
	3	55,448,044	Zv9	Busch-Nentwich et al., 2013
sa40172	3	54,600,520	GRCz11	Busch-Nentwich et al., 2013
	3	54,345,918	GRCz10	Busch-Nentwich et al., 2013
	3	55,452,192	Zv9	Busch-Nentwich et al., 2013
sa40173	3	54,602,947	GRCz11	Busch-Nentwich et al., 2013
	3	54,348,345	GRCz10	Busch-Nentwich et al., 2013
	3	55,454,619	Zv9	Busch-Nentwich et al., 2013
sa40174	3	54,602,948	GRCz11	Busch-Nentwich et al., 2013
	3	54,348,346	GRCz10	Busch-Nentwich et al., 2013
	3	55,454,620	Zv9	Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	91.8 cM	dnmt1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
ppan	GENE	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s872	Feature	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
angptl6	GENE	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2	GENE	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s904	Feature	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
eif3g	GENE	3		Anderson et al., 2009	Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using SSLP and RFLP markers.
s1pr2	GENE	3		Kupperman et al., 2000	Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal ...
z3725	SSLP	3	16.5 cM	Kupperman et al., 2000	Kupperman et al. (Nature 406, 192-195, 2000) mapped edg5 (mil) 16.5 cM distal ...

Genomic Feature s904 is an allele of dnmt1

Chr 3

Anderson et al. (2009, Dev. Biol. 334(1):213-223) mapped s872 and s904 to dnmt1 on LG3 using ...

Genomic Feature s904 is an allele of dnmt1