Genomic Feature
m209
- ID
- ZDB-ALT-980203-534
- Name
- m209
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- Driever Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 7: 5328277 (GRCz11) (1) Details
- Nucleotide change
- A/T
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- T>A in Intron 7 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AATCGTCCAGTTTGTGCAGCACTCTGATATGTGGAACTGTACTTGATCATGTTATTCACAAAATTAAAAAAACAATGCATTGCAGTTAGGGAGTCCGGGGTGACCCCGACAGCGAGTAGTTCATGTAGTGTAATAATTATAATAAAACCAAAGGAAGAGTGATATCTAGAAGTAAAGAGCGAGTGGTTTGTCCCTCTGCTGCTGCTGCTGTAGAGTCTCTGCTCCTCACACCGAGGTTTCCGACTGGAGCCGCATCACAAACTTGTGGCTCTTGGGGTCGATAAACTCCTCCCCCAGGTTGAGGAAAGGGAGGGGCGTCACCGTGACGACAAGGGCGAAGTCGAGGCGGCGCAGCGAGAAGACGAGGCCCTGACGTAGTGCTGCAGTCACCGGCTCCTCGCTCACCAGAGTCCACTGCCGCCCCCTGCCGTTCTCACGCTGGTACTGCATGGTGGGACCCGGAGTCAGGTAGCGCTCCAGAAATGCCTGACCACACATTC
A/T GAAAGACACAGGCAGACACACACACACACAAACACGCACAGGAAGAGGTTTGGTTAGATGCAGGCCTAGGCTGGTTTTACCTGGATTTTTCAGCAGGGTGACTATATAGACAAAGTAGAATAGTATGAGAAAACATCAGTTTGCAACATAAAGCAGCATCACGAGCTGCTTTTAACATCTAAAAACCAATGGAAGAGAGTATAAAGGCTGATTTAAACTTCTGGTCAAACACCGGCGTATGCTACGGCGCTGACGCATAGCCCTTCGCCGTGGCCGTCAGCGTCACTGACGTGCACCTCTCAAAAAATGTAACTACACGTCGCAACAACGCGTAGCGCAAGCTCTGTGATTGGTCAGCTTGGTATCGCTGACGAGTCTGGGCGGGACCGAGAGCCGCGCGAGCGATTGTTTTACAAATGTGGAGTCCCTGAAGGAGCTCCGGATGGAAAGTTTTGTTTTGTGTTTACCTCATAGTTAAAGTTGTTGCACGTCCGCCGGTT - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None
- Derrick, C.J., Szenker-Ravi, E., Santos-Ledo, A., Alqahtani, A., Yusof, A., Eley, L., Coleman, A.H.L., Tohari, S., Ng, A.Y., Venkatesh, B., Alharby, E., Mansard, L., Bonnet-Dupeyron, M.N., Roux, A.F., Vaché, C., Roume, J., Bouvagnet, P., Almontashiri, N.A.M., Henderson, D.J., Reversade, B., Chaudhry, B. (2023) Functional analysis of germline VANGL2 variants using rescue assays of vangl2 knockout zebrafish. Human molecular genetics. 33(2):150-169
- Jussila, M., Boswell, C.W., Griffiths, N.W., Pumputis, P.G., Ciruna, B. (2022) Live imaging and conditional disruption of native PCP activity using endogenously tagged zebrafish sfGFP-Vangl2. Nature communications. 13:5598
- Donati, A., Anselme, I., Schneider-Maunoury, S., Vesque, C. (2021) Planar polarization of cilia in the zebrafish floor-plate involves Par3-mediated posterior localization of highly motile basal bodies. Development (Cambridge, England). 148(13):
- Sidik, A., Dixon, G., Buckley, D.M., Kirby, H.G., Sun, S., Eberhart, J.K. (2021) Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway. BMC Biology. 19:134
- Ohta, S., Ji, Y.R., Martin, D., Wu, D.K. (2020) Emx2 regulates hair cell rearrangement but not positional identity within neuromasts. eLIFE. 9:
- Mathewson, A.W., Berman, D., Moens, C.B. (2019) Microtubules are required for the maintenance of planar cell polarity in monociliated floorplate cells. Developmental Biology. 452(1):21-33
- Navajas Acedo, J., Voas, M.G., Alexander, R., Woolley, T., Unruh, J.R., Li, H., Moens, C., Piotrowski, T. (2019) PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation. Nature communications. 10:3993
- Prince, D.J., Jessen, J.R. (2019) Dorsal convergence of gastrula cells requires a Vangl2 and adhesion protein-dependent change in protrusive activity. Development (Cambridge, England). 146(22):
- Dow, E., Jacobo, A., Hossain, S., Siletti, K., Hudspeth, A.J. (2018) Connectomics of the zebrafish's lateral-line neuromast reveals wiring and miswiring in a simple microcircuit. eLIFE. 7
- Ji, Y.R., Warrier, S., Jiang, T., Wu, D.K., Kindt, K. (2018) Directional selectivity of afferent neurons in zebrafish neuromasts is regulated by Emx2 in presynaptic hair cells. eLIFE. 7
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