Genomic Feature
hsi15
- ID
- ZDB-ALT-240419-2
- Name
- hsi15
- Synonyms
-
- rnaless (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Berman Lab
- Current Source
- Other Pages
-
Notes
| Comment | Citation |
|---|---|
| This deletion removes a portion of the promoter, the start codon, and exon 1 so ... | Prykhozhij et al., 2023 |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 20: 26000676 - 26001426 (GRCz11) (1) Details
- Nucleotide change
- CACAAATGAAAACAGAGGGATTTTTGCGTTTAACCAGAAAGTGGCATTCATATTATAGGATCAGTGAGGTATTTTCAGCTGAAATGACACATTTTGACTACACCTGATACCTACATTTTCAAGTCTACCTCTATAAACATACAACTTCAATATTCCTCTGACACCTACAGACATTCAATCAAACTGAATGAACCTAACAGGATACACTGCAACTGACCCCATGCACACTGCCACCTCACGCATGGTCACTCACCATTGGACGCTTCCATTCAAGCTTTAAGGGGAACTTTTCACTGTAAAAGAGAGAGGAGTCCTGAGCTGGGAACAGGGGGTCTTCAAACAGCACTTTCTTGCGTACATATTTATCTCTAAGCTCTTGAAAGTCCTTGAGCCTCCTGGCATCTTTAACAGCCTCATTACGGCTCAAAATGGCTGAATAAATGTTTCCAGGGGCTGTAAAACCACTGCCCACTGTCTGCGGAGCAGCTTCAGTGAGTTGGACAGATGTTTCTGAAAACTTCTGTTCTTCTGCCATATTGCTCTTTGATGACAGATGCCACAAGTGCGATGAATGAAAAGTATCCGAAGTAGGTCAATTTTATCAGCGCTATAGTCCTTATTTCACTTCTCAGTCCCTTTATATTGTGTTGAAGGCACACCCCTGCTCATGTACACAAATAAACACTCACAGTAAGGCAAATGCTGCACGCCACTTCACATATGCTTGCCTGCCTGCACACTTACACCCACC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 751 bp deleted in Start Codon (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CACCCCAAAATGATTTTTAGAATTGCATTTTTAGCATTATCATTACAAAAAGACTATAATTTTACCTTTAATATCCATGAATTAATGTTATTATAAGAGTACATTTCAGTCATCTGTCACTTTAAATACTTGAGCTCATTGAAGCAGATTCTGATTGGCTGTCAGTGCTATTGTAATTCATCAGCATAAAATATTCTAAGTGTGATTCTGTTGTTATTGACATTTCTGCAAATGGGACAATCAGTCAAAAAAGTTTGTATGGATTATTAGACACTTTGTGCGCTTAACTATCACAGCTGTAATTACATATTTAAGGCTACAGGGCTTTCAGACTCTGATGGTGACTGATAATCAAAATTCACACAATAAACAACTGAGTATCATTACATAGTGCATTGTGTCATATGGGACGCATCCAATATTAATTTCATTTATCATTCTTGTGGTGAAGATGCACATCCCTCTTCTGAAATGGAGCAGCTCATTTGCATTGAAAAAGA
CACAAATGAAAACAGAGGGATTTTTGCGTTTAACCAGAAAGTGGCATTCATATTATAGGATCAGTGAGGTATTTTCAGCTGAAATGACACATTTTGACTACACCTGATACCTACATTTTCAAGTCTACCTCTATAAACATACAACTTCAATATTCCTCTGACACCTACAGACATTCAATCAAACTGAATGAACCTAACAGGATACACTGCAACTGACCCCATGCACACTGCCACCTCACGCATGGTCACTCACCATTGGACGCTTCCATTCAAGCTTTAAGGGGAACTTTTCACTGTAAAAGAGAGAGGAGTCCTGAGCTGGGAACAGGGGGTCTTCAAACAGCACTTTCTTGCGTACATATTTATCTCTAAGCTCTTGAAAGTCCTTGAGCCTCCTGGCATCTTTAACAGCCTCATTACGGCTCAAAATGGCTGAATAAATGTTTCCAGGGGCTGTAAAACCACTGCCCACTGTCTGCGGAGCAGCTTCAGTGAGTTGGACAGATGTTTCTGAAAACTTCTGTTCTTCTGCCATATTGCTCTTTGATGACAGATGCCACAAGTGCGATGAATGAAAAGTATCCGAAGTAGGTCAATTTTATCAGCGCTATAGTCCTTATTTCACTTCTCAGTCCCTTTATATTGTGTTGAAGGCACACCCCTGCTCATGTACACAAATAAACACTCACAGTAAGGCAAATGCTGCACGCCACTTCACATATGCTTGCCTGCCTGCACACTTACACCCACC/- CAACTTTTCTCCATTCCTCTTAGAAGCTAATTCTATTTATAGGCCTCCTACAGGGACGAGAGGGTTTCTCTGTTTCTGCC ... - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None