Genomic Feature
co1005
- ID
- ZDB-ALT-201203-2
- Name
- co1005
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Artinger Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 15: 35398421 - 35398435 (GRCz11) (1) Details
- Nucleotide change
- CCCTGGCAACCCTGG/CCCCTGG
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 7 bp inserted / 15 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CTTTTCCGTTCTCCCGCACTCGCACCCGTTCCCGGTCACTTTCCACTTCACTGTCCAGCTCTGAACCTGAAGTGCTCTCCAACTCACTCCCGCTGGGAGTGCTGACATCATCCAGATCGCTACTCTCCGATTGGTCGCTCATCTTCCCGCCATGCCTTGGCTTAGAGATGGATCCTTCTCTCTGACGCTCCATATTCTCGCTTTCCCCGTTGAATGAATCCTTGCGTAAGCTCTTCAAGAGCTCATGTGAGCCAGAAATGGGTGAGGACAGCAGTGGACTCTTTCGTAGTTCAGTGCTCGGAGGGCCATTAATGGGCGATGTGGATGGGATTAGAGGGGGCCGATGGTAAAGTCCTGATGGGAAAAGTCCTGGAAAACTGAATGGGAATGCCGGAGGGGCTGCTGGGAACGTCAGCCCACTATGATGCCGGTTTGTCCCAAAATAGTCTGCTAAACCAGGACTCCCATGGCTCATTCCAGCCAGTGCGGACTTGTCCAGG
CCCTGGCAACCCTGG/CCCCTGG AGGGCCATGCCCTGCGCAAACAACCCTCCAGCGGCAGCAGCGAAATGATTTTTACCCTCACAGAAGCGCCGATGCTTGTTTAGGGATGATGTGGTGCTAAACATCTGCCCACAGTCTTTGCATTTGATCTGAGTACGACAGTCCGCGTGCATGCGCTTGTGGCGGCAGAGATTGGAGAACTGCGTGTAAGATTTGTGGCAGACCTCACCTAGAGACAGTGAGACATGGACACACAGTGTAAAGGGATTGCCGGTTTTGGCATGTCACACACACACATCCATTCACAAAACAAACAAAAATGCAGGATAAGCAAGGGTGGCAGATAAAAGAATGCAGTGTCACACGCAGGTGCACACACACACACACACATACACAGAGACAAGGACATACAATGGCTCTATTTTAAGCGTGAGAAGGAAACAGAGTTGAATGAATCCTCTCCCTCAGGTCCGTTCCCATGGACCAAGCGACGTCTCTGTCTATCATACAAACACACATCT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| mecomco1005/co1005 | Homozygous | ♀+/- ♂+/- | Fig. 1  from Shull et al., 2020 | 2 figures from Shull et al., 2020 | |
| mecomco1005/co1005 | Homozygous | Unknown | 2 figures from Shull et al., 2022 | ||
| mecomco1005/co1005; ba2Tg/ba2Tg | Complex | 2 figures from Shull et al., 2022 | Fig. 3 from Shull et al., 2022 | ||
| mecomco1005/co1005; ia5Tg/ia5Tg; y1Tg/y1Tg | Complex | Fig. 4 from Shull et al., 2022 | |||
| prdm16co1006/co1006; mecomco1005/co1005 | Complex | Fig. 6 from Shull et al., 2022 | |||
| prdm16co1006/co1006; prdm1am805/m805; mecomco1005/co1005 | Complex | Fig. 3 from Shull et al., 2020 | |||
| prdm16co1006/co1006; prdm1am805/m805; mecomco1005/+ | Complex | Fig. 3 from Shull et al., 2020 | |||
| prdm16co1006/co1006; prdm1am805/+; mecomco1005/co1005 | Complex | Fig. 3 from Shull et al., 2020 | |||
| prdm16co1006/co1006; prdm1am805/+; mecomco1005/+ | Complex | Fig. 3 from Shull et al., 2020 | |||
| prdm16co1006/+; prdm1am805/m805; mecomco1005/co1005 | Complex | Fig. 3 from Shull et al., 2020 |
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Supplemental Information
- Genotyping protocol
- None
- Shull, L.C., Lencer, E.S., Kim, H.M., Goyama, S., Kurokawa, M., Costello, J.C., Jones, K., Artinger, K.B. (2022) PRDM paralogs antagonistically balance Wnt/β-catenin activity during craniofacial chondrocyte differentiation. Development (Cambridge, England). 149(4):
- Shull, L.C., Sen, R., Menzel, J., Goyama, S., Kurokawa, M., Artinger, K.B. (2020) The conserved and divergent roles of Prdm3 and Prdm16 in zebrafish and mouse craniofacial development. Developmental Biology. 461(2):132-144
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