Genomic Feature
hdb11
- ID
- ZDB-ALT-180207-13
- Name
- hdb11
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Maria Leptin Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 16: 42003597 - 42004416 (GRCz11) (1) Details
- Nucleotide change
- ATAACCGTAAAATTATGGATTTTTTACAGTGAATATATAACACCATTTTTTATCTTATTTTGTATAGTGAGAGTTTTTTTTACATAATTTAAATATTGAATATACAGTAAGATATAATATAATAATAATAATAATGTGTTATGTAACAATAATATTATAAAATAAAATATCCACCACTCCAATCATGGAGCAGTCCAGCAGACAAATTTCAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACTATTTTTTTATTGTAAATACATTTTAATAAAACTAATCATTCAAAATGAAAAGACTGCATTAAGATAAAACAAAAGATTGAGTAATATAAAAAAACACCAAAATAAACAATAATCACATATAAAAGTAGAAAGGGTGTATCAGGACTTGGGCCCCATGGCTGAGGTTGCCTAGGGTCCCCAATTCGCTAAATCCGCCCCTGCATATCTATAATAACTTTAAAGAATGACAGACTGACTTTTTTCCGCGTTTGTCATTATGTGAAGCTTTACTCACCTTGCCCTGTGTTCTCCAAGAGCTCCTCTGCTACTGCATTACACTTGATACCCCTTAAAATGTCCACTGTTACAGAAACCGCGTCAGATGTGAAAGTGTTGACCAATAAATCAACCAGATCTATCTCGTCTTTCAGCTTTTCGATTGTAGATTTTCGGACGCGCGGTTCCTGCTTCCGATCGCCCAGTCTGCTTTGAAACCTTCTTAGATTATCCGCCCCAATA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 800 bp deleted (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
TGTCTTAAAATTCAGTGCACATAGTTTATGGCAAAGATTGTAGAAATTTGCTTGCTGTAGACCTATAAAACTGACTTCTTTTTCATAAGAAGAGAGTAATAAATAATTAATAGCAGGCAATATGTCCATTAAGCTATTTAGCCCAAGTCAAATGTTCGAAAATGAATAAATGTGTTCGATATTATAGACTAGAAGCTGACGATATGCACCGCATGCATGTCTAAAGGGGCGGATTTAACCAATAAGCGAGTTAAGCGGCCGCTTAGAGCCCCAGGTAATCTGGGGCCCCCAATAAATATCTAGAAGTGTAAATCATACCTATAAATTACACTGTAAAAAATACAGAAATTTACCATAAAATAACAGAGGTTGATTTATGGAAATTTACCAGAAATTTTTATCTAAGGGAACTACTGTAATTTAATGTTCGTTATTTTAACGTAATTTTATGTAATTTAATAGCCGTTATTTTATTTTTTCGGGCACCCCAACTACCAGAA
ATAACCGTAAAATTATGGATTTTTTACAGTGAATATATAACACCATTTTTTATCTTATTTTGTATAGTGAGAGTTTTTTTTACATAATTTAAATATTGAATATACAGTAAGATATAATATAATAATAATAATAATGTGTTATGTAACAATAATATTATAAAATAAAATATCCACCACTCCAATCATGGAGCAGTCCAGCAGACAAATTTCAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACACTATTTTTTTATTGTAAATACATTTTAATAAAACTAATCATTCAAAATGAAAAGACTGCATTAAGATAAAACAAAAGATTGAGTAATATAAAAAAACACCAAAATAAACAATAATCACATATAAAAGTAGAAAGGGTGTATCAGGACTTGGGCCCCATGGCTGAGGTTGCCTAGGGTCCCCAATTCGCTAAATCCGCCCCTGCATATCTATAATAACTTTAAAGAATGACAGACTGACTTTTTTCCGCGTTTGTCATTATGTGAAGCTTTACTCACCTTGCCCTGTGTTCTCCAAGAGCTCCTCTGCTACTGCATTACACTTGATACCCCTTAAAATGTCCACTGTTACAGAAACCGCGTCAGATGTGAAAGTGTTGACCAATAAATCAACCAGATCTATCTCGTCTTTCAGCTTTTCGATTGTAGATTTTCGGACGCGCGGTTCCTGCTTCCGATCGCCCAGTCTGCTTTGAAACCTTCTTAGATTATCCGCCCCAATA/- TTACTTAAAGCGTCCTGAAGATGGTCCTTGATAGATTTGGCCATGTTTAGCTCAGGGCGCTGACTGAATGCCGAAGGTCA ... - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None