Genomic Feature
y447
- ID
- ZDB-ALT-160323-5
- Name
- y447
- Synonyms
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Dawid Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 24: 21671085 - 21671346 (GRCz11) (1) Details
- Nucleotide change
- TACCTGTGTTTGAGATGTGCCTCCAGGTCGCAGCGAGGCATGCTGAGCGAGCAGGAGGGCGTGAGCGGACAGGTGACCGACAACTTGTCCAGCAGCTTGTGCACCAGAATGCTGGAGCGCCGGCAGACCTGCAGCTGCAGATGCGCACGGTCCAGTGGACAGAAGTCCCGTTCCTGCAGGAAGCTGCGCAGACAGCGGGCACAGAAGGTGTGGCCACATGGTGTATCCAGGGGCTGAACTAACGGCTGAAGGCAGATGTGGC/-
- Variant Notes
-
The exon 2 splice donor site has been lost resulting in a truncated protein.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- in Donor Splice Site of Exon 2 (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GCTATTTATATTCTCCTGGATTTATTATAAATATGGAGGTGTTTGTATCTGAATTTTATTAAGCACACTTTATACACATAGCTAGGCCTGTATATAAGGTTTATTGGTGCTGTTAAATTAATTATCACGTTCAAAAAAAAAAGTTTGTACACATGGATGTATTGATTAAATGTTGATAACATGCCTCCTTTTCTTCTGCTTTTCAGACATTTTCATAAACTTTCCCCCCTTTTTGACTTTTTGAGCAAAAAATTTTGGCAGTCTATAAAAAGCTGTTCGCCATTTCTTATTTTGGCCAATCTAAACAATTATAAACAACATAAAATATACACATTTTGATGTTCTGATTGCAGTTCCTATGTAAAAGAACCACTTCCTGCCCTCTATCTGAATTTCATGCAACATCAATGGCATCAGATAAAAATAACCTAATGCTCGAGTACCAAAACATTGACATCAAATAGTGCTTATTTGAGTCTGAATATTTGTCTTGAGAACTT
TACCTGTGTTTGAGATGTGCCTCCAGGTCGCAGCGAGGCATGCTGAGCGAGCAGGAGGGCGTGAGCGGACAGGTGACCGACAACTTGTCCAGCAGCTTGTGCACCAGAATGCTGGAGCGCCGGCAGACCTGCAGCTGCAGATGCGCACGGTCCAGTGGACAGAAGTCCCGTTCCTGCAGGAAGCTGCGCAGACAGCGGGCACAGAAGGTGTGGCCACATGGTGTATCCAGGGGCTGAACTAACGGCTGAAGGCAGATGTGGC/- ACACCAAATCATCATCCACTTCCAAACGATAGTTATAAAGGTGGTTCTCCCAGGTGCGGTGAATCTGTCCACATTCAGAGCAAAGGGCCTCCAGAAGAGCTTCGCTCACCATGCCCGGGTCCACTCCCTCTCCCAGACTGCCCATTGCTCTCGGCTTTGGCTACACTCACTCAGTCCATCCCGCGGGCGTCAGAGGCTGTGCGACTCCGGCAGGGGACGACCACCCCCTGGCAGGCACAGTGACATCACTCTGAAGGGTGGCAGAGAAACAGTGAGGTAACTATTGTGAATGAGAGACAGTGTTTGTGTGTGCCAGGATGAGATTATGTTGCAGAGCAGTGTGGGTTTACTCCTGCACATTAATCTGGCAGTGTAATCTCATGCTCTCTCGCCTAGAGAAATCTTTCAATCCCGCAGAGAGAGAATTATCCAGGATTGAGGCAGGGAGCACCGAGTCAAGAGGTTTTCATGTGAAAGTGAGAAAAGGAGGGGCAAGAGAA - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None