Transcript

scarb1-206

ID

ZDB-TSCRIPT-141209-878

Name

scarb1-206 Nomenclature History

Previous Names

scarb1-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

scarb1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000169466 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000169466.2|gene_biotype:protein_coding|ENSDARG00000101557.3 transcript_biotype:nonsense_mediated_decay gene_symbol:scarb1 cdna chromosome:GRCz11:10:44699817:44713817:1
TTTAACATCGCTCACAGCTGTGCACTTCATGACCGTAAAG
CTATAAGAGCATTAATTACCTCAATGAGCCGGCTTTTATG
GCTTTATCTCGCGTAAATGATAGTTTGTTCAGCTGTTGAG
ACGGTCTCTCTCGCGTTTGGAGCTCGCCGCGCTTTCCAGA
AGAAATCACTTTATTTATTTCCTTCAGAACTTCTGCGTTT
ATTTTGAAGTGTGAGAAATAAGGATGGTGTCTCAAACGAC
AGTATCGATCGTGTTTTTAGTTCTGGGAGGCATGGCGTTG
TTGTTCGGGACTGTCCTGGTGTTTGTGGGACCGATCATAA
TTGATGATCAAATAGTGAAGAATGTGGAGATCAATCCCAA
AAACGATCTCTCCTACACCATGTGGAAGGACATCCCGGTT
CCTTTCTTCATGTCTGTTTATTTTTTCCACATCGTCAATC
CTGATGAGATCCTGAAAGGAGAAAGGCCCATGGTGATCCA
GAGAGGGCCGTACGTGTACCGGGAGCATCAGTGATGATGG
AGAACATGCCGTTTCCCGTCCGCCTTCTGCTCAGCACCAC
CTTCAAGACCTTTAACGAGGGTCCGTTCCTGACCAAACCA
GTAGGAGAGCTGATGTGGGGCTATGACAGCAAACTAGTGG
ACTTCCTCAACAAATACCTGCCCGGCATGCTCCCGTCCAG
CGGCAAATTCGGCTTATTTGCTGATTTTAATAACTCCAAC
ACGGGGCTGTTCACCATCTTCACCGGCCGAGACGACATCC
GCAAGGTGCACATGGTGGACTCCTGGAACGGCCTCAAAAA
TGTAAGAAAAAAACGCATGCATTTTGATTATAAAAATGAT
GCAA

OTTDART00000061158 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000061158|OTTDARG00000030827|ZDB-GENE-031126-1 scarb1|OTTDARP00000047343 scarb1-003 LG_ CU463283.16 Danio rerio protein_coding KNOWN, 844 bp
TTTAACATCGCTCACAGCTGTGCACTTCATGACCGTAAAG
CTATAAGAGCATTAATTACCTCAATGAGCCGGCTTTTATG
GCTTTATCTCGCGTAAATGATAGTTTGTTCAGCTGTTGAG
ACGGTCTCTCTCGCGTTTGGAGCTCGCCGCGCTTTCCAGA
AGAAATCACTTTATTTATTTCCTTCAGAACTTCTGCGTTT
ATTTTGAAGTGTGAGAAATAAGGATGGTGTCTCAAACGAC
AGTATCGATCGTGTTTTTAGTTCTGGGAGGCATGGCGTTG
TTGTTCGGGACTGTCCTGGTGTTTGTGGGACCGATCATAA
TTGATGATCAAATAGTGAAGAATGTGGAGATCAATCCCAA
AAACGATCTCTCCTACACCATGTGGAAGGACATCCCGGTT
CCTTTCTTCATGTCTGTTTATTTTTTCCACATCGTCAATC
CTGATGAGATCCTGAAAGGAGAAAGGCCCATGGTGATCCA
GAGAGGGCCGTACGTGTACCGGGAGCATCAGTGATGATGG
AGAACATGCCGTTTCCCGTCCGCCTTCTGCTCAGCACCAC
CTTCAAGACCTTTAACGAGGGTCCGTTCCTGACCAAACCA
GTAGGAGAGCTGATGTGGGGCTATGACAGCAAACTAGTGG
ACTTCCTCAACAAATACCTGCCCGGCATGCTCCCGTCCAG
CGGCAAATTCGGCTTATTTGCTGATTTTAATAACTCCAAC
ACGGGGCTGTTCACCATCTTCACCGGCCGAGACGACATCC
GCAAGGTGCACATGGTGGACTCCTGGAACGGCCTCAAAAA
TGTAAGAAAAAAACGCATGCATTTTGATTATAAAAATGAT
GCAA

Related Transcripts

Transcripts related to scarb1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	scarb1-206	Ensembl	844 nt
mRNA	scarb1-001_dup (1)		1,491 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	scarb1-201 (1) Ensembl	Ensembl	773 nt	Select Tool ZFIN BLAST
mRNA	scarb1-202 (1) Ensembl	Ensembl	4,451 nt	Select Tool ZFIN BLAST
mRNA	scarb1-203 (1) Ensembl	Ensembl	436 nt	Select Tool ZFIN BLAST
mRNA	scarb1-204 (1) Ensembl	Ensembl	2,598 nt	Select Tool ZFIN BLAST
mRNA	scarb1-205 (1) Ensembl	Ensembl	4,412 nt	Select Tool ZFIN BLAST
mRNA	scarb1-207 (1) Ensembl	Ensembl	6,606 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations