Transcript

lpcat1-205

ID

ZDB-TSCRIPT-120213-337

Name

lpcat1-205 Nomenclature History

Previous Names

lpcat1-004

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

lpcat1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000151752 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000151752.3|gene_biotype:protein_coding|ENSDARG00000011506.13 transcript_biotype:nonsense_mediated_decay gene_symbol:lpcat1 cdna chromosome:GRCz11:19:28291376:28315953:1
ACGCGCATGATGCTGTGAATGAACAGGAGAAGCCGAGCAC
CGGTGGCTTAAAAATCGACTAGAAGCGCGTGTACATATTA
CTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACG
GCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTA
GAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCA
GAAACTCAAGAGAACATTGAGTGGAGGCAGGTCATGATTG
ACAGTGCTGCCCACAGGCTAATATGGTCCAACACTAGATC
TGAAACAAGATAGCTGTGATGACTGTGACGCTTTTCCCTG
TTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTG
GCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAAT
GCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATC
TGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGG
AGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTG
CCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTT
CCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTC
TATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGG
GGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCC
GCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGAT
CAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATC
ATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTC
TCATCGCATTTAAGCCTGGT

OTTDART00000054526 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000054526|OTTDARG00000014942|ZDB-GENE-060503-915 lpcat1|OTTDARP00000042832 lpcat1-004 LG_ BX571830.6 Danio rerio protein_coding KNOWN, 820 bp
ACGCGCATGATGCTGTGAATGAACAGGAGAAGCCGAGCAC
CGGTGGCTTAAAAATCGACTAGAAGCGCGTGTACATATTA
CTGCTCCAGCATGAGGTTCCCAAACAGAAAACTACACACG
GCGGTGAACGGAGGAGACTCGGGCGTTTCTACTCACTTTA
GAAACCCTTTCGTGCACGAGTTGCGGTTTACTACTCTTCA
GAAACTCAAGAGAACATTGAGTGGAGGCAGGTCATGATTG
ACAGTGCTGCCCACAGGCTAATATGGTCCAACACTAGATC
TGAAACAAGATAGCTGTGATGACTGTGACGCTTTTCCCTG
TTCGTCTGCTCTTTGCTGCATTCATGATGTTGTTGGCCTG
GCCCTTTGCATTCGTGGCTACTGTTGGCCGTTCTGAAAAT
GCAGTTGAGCCCCTGTCCTGGTGGAGGTGGCTGGTGGATC
TGGCCCTGAAGGCCATCATGAGGGCCATGTGGTTTTCCGG
AGGGTTTCATTGGGTCCGTGTGAAGGGTCGGCCGGCTCTG
CCCAGTGAAGCACCTATCCTCACGATGGCACCTCACTCTT
CCTACTTTGATGCCATCCCTGTCACCATGACCATGGCCTC
TATAGTGATGAAGGCAGAGAGTAAAGACATTCCAGTCTGG
GGAACTCTTATCAAATTCATTCGGCCAGTGTTTGTGTCCC
GCTCGGATCAGGACTCCCGGAGGAAGACCGTCGAGGAGAT
CAAACGTAGAGCGTCATCTAATGGCGAATGGCCTCAGATC
ATGATATTCCCGGAGGGCACATGCACCAATAGATCCTGTC
TCATCGCATTTAAGCCTGGT

Related Transcripts

Transcripts related to lpcat1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	lpcat1-204 (1) Ensembl	Ensembl	668 nt	Select Tool
aberrant processed transcript	lpcat1-205	Ensembl	820 nt
mRNA	lpcat1-201 (1) Ensembl	Ensembl	2,050 nt	Select Tool
mRNA	lpcat1-202 (1) Ensembl	Ensembl	798 nt	Select Tool
mRNA	lpcat1-206 (1) Ensembl	Ensembl	2,027 nt	Select Tool ZFIN BLAST
ncRNA	lpcat1-002 (1) Ensembl	Ensembl	505 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations