Gene
pabpc1b
- ID
- ZDB-GENE-050308-1
- Name
- poly A binding protein, cytoplasmic 1 b
- Symbol
- pabpc1b Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Predicted to be involved in regulation of RNA metabolic process. Predicted to localize to nucleus and ribonucleoprotein complex. Is expressed in several structures, including alar plate midbrain region; nervous system; notochord; pronephric duct; and yolk syncytial layer. Orthologous to human PABPC1 (poly(A) binding protein cytoplasmic 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:73346 (22 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein |
| Domain | IPR003954 | RNA recognition motif domain, eukaryote |
| Domain | IPR034364 | PABP, RNA recognition motif 1 |
| Domain | IPR045305 | PABP, RNA recognition motif 2 |
| Family | IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036053 | PABC (PABP) domain |
Domain Details Per Protein
| Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | PABC (PABP) domain | PABP, RNA recognition motif 1 | PABP, RNA recognition motif 2 | Polyadenylate binding protein, human types 1, 2, 3, 4 | Polyadenylate-binding protein/Hyperplastic disc protein | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryote |
|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M9PRE3
|
480 | |||||||||
|
UniProtKB:Q6P3L1
|
634 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
pabpc1b-204
(1)
|
Ensembl | 1,062 nt | ||
| mRNA |
pabpc1b-201
(1)
|
Ensembl | 2,804 nt | ||
| mRNA |
pabpc1b-203
(1)
|
Ensembl | 742 nt | ||
| ncRNA |
pabpc1b-003
(1)
|
Ensembl | 529 nt |
Interactions and Pathways
No data available
Plasmids
No data available