Gene

rpf1

ID

ZDB-GENE-040625-177

Name

ribosome production factor 1 homolog

Symbol

rpf1 Nomenclature History

Previous Names

bxdc5
zgc:86604

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to localize to nucleolus and preribosome, large subunit precursor. Orthologous to human RPF1 (ribosome production factor 1 homolog).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Madakashira et al., 2021

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rpf1 Human Ortholog

No data available

Associated With rpf1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR007109	Brix domain
Family	IPR044281	U3 snoRNP protein/Ribosome production factor 1

Domain Details Per Protein

Protein	Length	Brix domain	U3 snoRNP protein/Ribosome production factor 1
UniProtKB:Q6IQU6 InterPro	330
UniProtKB:A0A2R8QNF3 InterPro	355
UniProtKB:A0A0R4IWG2 InterPro	249

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rpf1-201 (1) Ensembl	Ensembl	1,523 nt	Select Tool
mRNA	rpf1-203 (1) Ensembl	Ensembl	1,213 nt	Select Tool ZFIN BLAST
ncRNA	rpf1-002 (1) Ensembl	Ensembl	758 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations