Gene
vipas39
- ID
- ZDB-GENE-040520-1
- Name
- VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
- Symbol
- vipas39 Nomenclature History
- Previous Names
-
- vipar
- si:ch211-20b12.1
- wu:fb63f10 (1)
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Involved in hepaticobiliary system development. Predicted to localize to cytoplasm. Human ortholog(s) of this gene implicated in arthrogryposis, renal dysfunction, and cholestasis 2. Is expressed in intestine and liver. Orthologous to human VIPAS39 (VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Cullinane et al., 2010
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Cullinane et al., 2010
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| arthrogryposis, renal dysfunction, and cholestasis 2 | Alliance | Arthrogryposis, renal dysfunction, and cholestasis 2 | 613404 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | Spermatogenesis-defective protein 39 | Vps16, C-terminal |
|---|---|---|---|
|
UniProtKB:Q5TYV4
|
483 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
vipas39-201
(1)
|
Ensembl | 1,938 nt | ||
| mRNA |
vipas39-202
(1)
|
Ensembl | 1,867 nt | ||
| mRNA |
vipas39-203
(1)
|
Ensembl | 704 nt | ||
| mRNA |
vipas39-204
(1)
|
Ensembl | 3,987 nt |
Interactions and Pathways
No data available
Plasmids
No data available