Gene

csde1

ID

ZDB-GENE-030131-8623

Name

cold shock domain containing E1, RNA-binding

Symbol

csde1 Nomenclature History

Previous Names

fa92c07
si:ch211-261n11.2 (1)
wu:fa92c07 (1)
wu:fa97c10
wu:fb53f07
wu:fb78d03

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have nucleic acid binding activity. Orthologous to human CSDE1 (cold shock domain containing E1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7146752 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With csde1 Human Ortholog

No data available

Associated With csde1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019844	Cold-shock domain, conserved site
Domain	IPR002059	Cold-shock protein Csp, DNA-binding
Domain	IPR011129	Cold-shock domain
Domain	IPR024642	SUZ-C domain
Homologous_superfamily	IPR012340	Nucleic acid-binding, OB-fold

Domain Details Per Protein

Protein	Length	Cold-shock domain	Cold-shock domain, conserved site	Cold-shock protein Csp, DNA-binding	Nucleic acid-binding, OB-fold	SUZ-C domain
UniProtKB:A0A8M6Z7J9 InterPro	875
UniProtKB:A0A8M6Z0D9 InterPro	865
UniProtKB:E9QFH8 InterPro	798
UniProtKB:A0A8M9QDL5 InterPro	865
UniProtKB:A0A8M9Q3B4 InterPro	817
UniProtKB:A0A8M9QDL2 InterPro	884
UniProtKB:A0A8M9PQP7 InterPro	880
UniProtKB:A0A8M6Z210 InterPro	846
UniProtKB:A0A8M9Q3B0 InterPro	879
UniProtKB:A0A8M9PQQ1 InterPro	836
UniProtKB:A0A8M9Q9J3 InterPro	878
UniProtKB:A0A2R8QTF0 InterPro	874

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	csde1-202 (1) Ensembl	Ensembl	4,654 nt	Select Tool
mRNA	csde1-204 (1) Ensembl	Ensembl	1,131 nt	Select Tool
mRNA	csde1-205 (1) Ensembl	Ensembl	1,052 nt	Select Tool
mRNA	csde1-206 (1) Ensembl	Ensembl	2,490 nt	Select Tool ZFIN BLAST
mRNA	csde1-207 (1) Ensembl	Ensembl	3,383 nt	Select Tool ZFIN BLAST
mRNA	csde1-208 (1) Ensembl	Ensembl	3,398 nt	Select Tool ZFIN BLAST
ncRNA	csde1-002 (1) Ensembl	Ensembl	604 nt	Select Tool
ncRNA	csde1-003 (1) Ensembl	Ensembl	582 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations