Gene

rtf1

ID

ZDB-GENE-030131-6778

Name

RTF1 homolog, Paf1/RNA polymerase II complex component

Symbol

rtf1 Nomenclature History

Previous Names

fb33g03
wu:fa04h07
wu:fb33g03

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to have RNA polymerase II C-terminal domain phosphoserine binding activity. Involved in several processes, including neural crest cell development; post-anal tail morphogenesis; and somitogenesis. Localizes to nucleus. Orthologous to human RTF1 (RTF1 homolog, Paf1/RNA polymerase II complex component).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Langenbacher et al., 2011

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 8 figures from 4 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rtf1 Human Ortholog

No data available

Associated With rtf1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004343	Plus-3 domain
Homologous_superfamily	IPR036128	Plus3-like superfamily

Domain Details Per Protein

Protein	Length	Plus-3 domain	Plus3-like superfamily
UniProtKB:A3KDM2 InterPro	681

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rtf1-201 (1) Ensembl	Ensembl		3,122 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-rtf1	polyclonal	rtf1	IgG	Rabbit	WB	Abcam plc	2

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations