Gene

hoxc6b

ID

ZDB-GENE-000822-1

Name

homeobox C6b

Symbol

hoxc6b Nomenclature History

Previous Names

hoxy6

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification. Predicted to localize to nucleus. Is expressed in several structures, including margin; musculature system; neuroectoderm; paraxial mesoderm; and tail bud. Orthologous to human HOXC6 (homeobox C6).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

10 figures from 5 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu500 (17 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hoxc6b Human Ortholog

No data available

Associated With hoxc6b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR001827	Homeobox protein, antennapedia type, conserved site
Conserved_site	IPR017970	Homeobox, conserved site
Domain	IPR001356	Homeodomain
Domain	IPR020479	Homeodomain, metazoa
Family	IPR050296	Antennapedia-type homeobox
Homologous_superfamily	IPR009057	Homedomain-like superfamily

Domain Details Per Protein

Protein	Length	Antennapedia-type homeobox	Homedomain-like superfamily	Homeobox, conserved site	Homeobox protein, antennapedia type, conserved site	Homeodomain	Homeodomain, metazoa
UniProtKB:Q9PWM5 InterPro	227
UniProtKB:A0A8M1P8V2 InterPro	214
UniProtKB:A0A2R8QUV2 InterPro	228
UniProtKB:A0A2R8Q006 InterPro	227

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	hoxc6b-201 (1) Ensembl	Ensembl	1,420 nt	Select Tool ZFIN BLAST
mRNA	hoxc6b-203 (1) Ensembl	Ensembl	781 nt	Select Tool ZFIN BLAST
ncRNA	hoxc6b-202 (1) Ensembl	Ensembl	1,335 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations