Genomic Feature
vo35
- ID
- ZDB-ALT-180926-3
- Name
- vo35
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Nicolson Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 8: 23883978 - 23883982 (GRCz11) (1) Details
- Nucleotide change
- CAATT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 5 bp deleted from position 320 to 324 in RefSeq:NM_001110113 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AATTATTTAGGGCCCACAAATTATTAAATGCGCCTCTGAACGTCATTATTTTTCTCTCATTAAATTGAATGCACAATAGAATATTAATTAAACGTCAACTCTGTTATTGTGATATTTCAGTGAATATCTTATTCAATAAAAAAAAAAACAATAATACATTTTAGACATGCCATGTGGCTTGGCGGGAAAGCAAAAAAAAGATGTCTAGCCATATTAATAAACAATATTTCAAAACTATTTCAATTGGTCTTCCTTTTAATTTAACTGCTTTTAAGCAGCATGTATACTTATTTGCAGGGCTCACTGAAAAGCGGCCTACCTGAAGATGTTTGCATCCAAGCGCAGATCTTGTAGACACTAGCGGCGTTGCAGAAGAAGAAAAGACCCAAGCACACAATGGTGCCCACAATCAGCAGCATTGAAGTTCCCACAAAAAACAAAGCGGTCCTGAAAGCCCCAGAGGGGATTGAGCCAAAATCGAACACACTTCCTTTGCAGAC
CAATT/- CCGAGGTGATTGGGTTGCCAATACAGTAGCGAAAAAGCCCAAAGTATCCAGCCTGTGGGGTGTTAACACTGTCACCAATCCAATACGGCTGAATAAAGACCACCACGGTAATGATGGCGAAGAATAAGGTGAAAACTGCCCACATGACGCCGATGGCTCTGGAGTTTCGCACATAATTGGTGTGGTAGATTTTGGCAGCCTCTTGGGCTGGAAGCATCTTTTCTTTTGCCATTGTTAGATATCCAGAGAGAAATCAATATTTGTCAAAAAGAAGAAGCTGAATACCGAGTACTCTTACACCTCCGGTTATATCGTAGCTGATCTTCAAAGGCAGGTGAAGCCAGTCAAATAGTGTCAGAAACAGGGCTGCTGCCAACAAAGGTGTCAGTTTTTGAATTATTGATGGTAAATGAAGCTGAAGAATAAGGTGACGACAATAACCTGTTCTCGTAGGTGCTGTTATTGGATACATTTGTTACTTCACAAAGCTATTGTGTTTG - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None
- Venuto, A., Thibodeau-Beganny, S., Trapani, J.G., Erickson, T. (2023) A sensation for inflation: initial swim bladder inflation in larval zebrafish is mediated by the mechanosensory lateral line. The Journal of experimental biology. 226(11):
- Venuto, A., Smith, C.P., Cameron-Pack, M., Erickson, T. (2022) Alone in a crowd: effect of a nonfunctional lateral line on expression of the social hormone parathyroid hormone 2. Biology Open. 11(10):
- Gao, Y., Nicolson, T. (2021) Temporal Vestibular Deficits in synaptojanin 1 (synj1) Mutants. Frontiers in molecular neuroscience. 13:604189
- Holmgren, M., Ravicz, M.E., Hancock, K.E., Strelkova, O., Kallogjeri, D., Indzhykulian, A.A., Warchol, M.E., Sheets, L. (2021) Mechanical overstimulation causes acute injury and synapse loss followed by fast recovery in lateral-line neuromasts of larval zebrafish. eLIFE. 10:
- Erickson, T., Pacentine, I.V., Venuto, A., Clemens, R., Nicolson, T. (2020) The lhfpl5 Ohnologs lhfpl5a and lhfpl5b Are Required for Mechanotransduction in Distinct Populations of Sensory Hair Cells in Zebrafish. Frontiers in molecular neuroscience. 12:320
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