ZFIN ID: ZDB-GENE-030116-3

Mapping Details

Gene Name:	sec1 family domain containing 1
Symbol:	scfd1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	17	28,771,028 - 28,797,395	GRCz11
Ensembl	17	28,771,028 - 28,797,395	GRCz11
Vega	17	28,754,065 - 28,780,432	GRCv10
NCBI Map Viewer	17	28,771,027 - 28,797,395	GRCz11
UCSC	17	-	GRCz11

Mapped Clones containing scfd1
DKEY-18B8	Chr: 17 Details
BUSM1-234G15	Chr: 17 Details
BUSM1-67D8	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
sa23100	17	28,786,863	GRCz11	Busch-Nentwich et al., 2013
	17	28,769,900	GRCz10	Busch-Nentwich et al., 2013
	17	28,845,973	Zv9	Busch-Nentwich et al., 2013
sa23101	17	28,793,568	GRCz11	Busch-Nentwich et al., 2013
	17	28,776,605	GRCz10	Busch-Nentwich et al., 2013
	17	28,852,678	Zv9	Busch-Nentwich et al., 2013
sa42952	17	28,777,777	GRCz11	Busch-Nentwich et al., 2013
	17	28,760,814	GRCz10	Busch-Nentwich et al., 2013
	17	28,836,887	Zv9	Busch-Nentwich et al., 2013
sa42953	17	28,793,453	GRCz11	Busch-Nentwich et al., 2013
	17	28,776,490	GRCz10	Busch-Nentwich et al., 2013
	17	28,852,563	Zv9	Busch-Nentwich et al., 2013
vcc43	17	28,788,987	GRCz11	Huttner et al., 2023
vcc44	17	28,789,025 - 28,789,035	GRCz11	Huttner et al., 2023
zp2	17	28,793,363	GRCz11	Nechiporuk et al., 2003

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
17	74.2 cM	sly1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z9818	SSLP	17		Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.
z22016	SSLP	17		Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.
z1278	SSLP	17		Nechiporuk et al., 2003	Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in 1582 backcrossed progeny. In addition, the authors reported that emm mapped 0.19 cM from SSCP 67d8t7 and 0.06 cM from SSCP 142b24sp6. PAC clones were used to map emm, and the authors reported that the following transcripts were located near emm: pie, COL12A1, SG2NA, and AP4S1.

Chr 17

Nechiporuk et al., 2003

Nechiporuk et al. (Dev. Biol. 258:291-306) reported that the SSLP Z22016 was non-recombinant in ...

Genomic Feature nju201Gt is an allele of scfd1