ZFIN ID: ZDB-GENE-980526-347

Mapping Details

Gene Name: LIM homeobox 1a
Symbol: lhx1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 15 27,703,409 - 27,710,575 GRCz11
Ensembl 15 27,703,409 - 27,710,575 GRCz11
Vega 15 27,770,533 - 27,777,699 GRCv10
NCBI Map Viewer 15 27,703,060 - 27,711,021 GRCz11
UCSC 15 - GRCz11
Mapped Clones containing lhx1a
CH211-190N9 Chr: 15 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa15189 15 27,710,266 GRCz11 Busch-Nentwich et al., 2013
15 27,777,390 GRCz10 Busch-Nentwich et al., 2013
15 27,059,150 Zv9 Busch-Nentwich et al., 2013
sa15800 15 27,708,689 GRCz11 Busch-Nentwich et al., 2013
15 27,775,813 GRCz10 Busch-Nentwich et al., 2013
15 27,057,573 Zv9 Busch-Nentwich et al., 2013
sa39051 15 27,708,001 GRCz11 Busch-Nentwich et al., 2013
15 27,775,125 GRCz10 Busch-Nentwich et al., 2013
15 27,056,885 Zv9 Busch-Nentwich et al., 2013
sa42561 15 27,710,158 GRCz11 Busch-Nentwich et al., 2013
15 27,777,282 GRCz10 Busch-Nentwich et al., 2013
15 27,059,042 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
15 91.2 cM lim1 Mother of Pearl (MOP) Postlethwait, John H. Data
15 210.53 cR lim1 Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
15 71.2 cM lim1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Markers Encoded by lhx1a
fe25d04 Chr: 15 Details
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 1330 MspI 36.0
Forward Primer GTGGACAGACTCGAGCC
Reverse Primer GACTAGGCGAGTCTCC
Genomic Feature sa39051 is an allele of lhx1a