ZFIN ID: ZDB-GENE-020905-1

Mapping Details

Gene Name:	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
Symbol:	atp2a1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	3	26,081,343 - 26,157,066	GRCz11
Ensembl	3	26,081,343 - 26,157,066	GRCz11
Vega	3	25,950,472 - 26,026,195	GRCv10
NCBI Map Viewer	3	26,145,034 - 26,154,478	GRCz11
UCSC	3	-	GRCz11

Mapped Clones containing atp2a1
CH211-11K18	Chr: 3 Details
CH73-46H18	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
dta5	3	26,152,109	GRCz11	Olson et al., 2010
mi25i	3	26,147,472	GRCz11	Hirata et al., 2004
mi289a	3	26,153,429	GRCz11	Hirata et al., 2004
sa10632	3	26,153,283	GRCz11	Busch-Nentwich et al., 2013
	3	26,022,412	GRCz10	Busch-Nentwich et al., 2013
	3	26,881,824	Zv9	Busch-Nentwich et al., 2013
sa16659	3	26,151,664	GRCz11	Busch-Nentwich et al., 2013
	3	26,020,793	GRCz10	Busch-Nentwich et al., 2013
	3	26,883,443	Zv9	Busch-Nentwich et al., 2013
sa17743	3	26,152,194	GRCz11	Busch-Nentwich et al., 2013
	3	26,021,323	GRCz10	Busch-Nentwich et al., 2013
	3	26,882,913	Zv9	Busch-Nentwich et al., 2013
tq206	3	26,152,955	GRCz11	Hirata et al., 2004

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	46.5 cM	atp2a1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
ntn1b	GENE	3	4.3 cR	Hirata et al., 2004
z4161	SSLP	3		Hirata et al., 2004
tq206	Feature	3		Hirata et al., 2004

Markers Encoded by atp2a1
fb17h11 Chr: 3 Details
fb19b10 Chr: 3 Details

Genomic Feature tq206 is an allele of atp2a1

Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	52.3 cM	tq206	Boston MGH Cross (MGH)	Geisler, Robert	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature tq206 is an allele of atp2a1

Marker	Type	Chr	Distance	Publication / Person	Comments
z4161	SSLP	3	6.8 cM	Hirata et al., 2004
ntn1b	GENE	3	0.2 cM	Hirata et al., 2004
fc25e04	EST	3	0.06 cM	Gleason et al., 2004	Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3 ...
z20966	SSLP	3	1.2 cM	Gleason et al., 2004	Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3 ...
z10805	SSLP	3	1.4 cM	Gleason et al., 2004	Gleason et al. (2004.Dev. Biol. 276:441-451) reports mapping acc to LG3 ...
z9257	SSLP	3	1.5 cM	Gleason et al., 2004
z10934	SSLP	3	6.1 cM	Gleason et al., 2004
atp2a1	GENE	3		Hirata et al., 2004

Genomic Feature sa17743 is an allele of atp2a1