Genomic Feature

sh567

ID
ZDB-ALT-210713-7
Name
sh567
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Cunliffe Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 25: 22303197 - 22303444 (GRCz11) (1) Details
Nucleotide change
GGGATGGTATCTTTAACCAAGGTAACAGAACGCTACAGCTGTTAAATAAAATTATTGTTTTTAATTTGCTGTTTTTTTTTCCTTGAAATCCACCTTGATTTTATATCCCATGTGAATTTTCATAGCTGACCGATGTATCCAGAATATCTACAGACAATTGCGGAAAAACCCCGAAGGTAATGGGAAATACACTGGTGTGCTGGCAAGCCTTCTAATGCTGGACAAACTGTCCATCGAGGACATAAAGG/-
Variant Notes
This line contains a deletion of
144 bp leading to a truncated protein of 464aa  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
248 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AATATATATTAAACTCAATTTACAATAAAAGTTACAATGTTTTTATTTCTGGTGACTGAAAATCACAGTTAAAACATTGGTATTGTGTTTTGAACTTTGCATAAACCAAACATCATCACATTATAAAACAATTATGTTATCTTAATGATAGGATACTAATACTGAAATTCTAGGACTTTTTGGTACAAATTATGCTGCTGGGGTTTTGGGGTGACCAAATGGATAGTTCACCCAAATGTAAATTTCTGTTTCATTTATGTGTGGAATACTTTGCACAAACCCTACACTGCTGAGTGTTTTCTGTTTGTGTTTCTCAGCGGTGAGTGCTGTGTTGTACGGCGAGCGTTTGGGTCTGCTGTTGGACTACATTGATCCAGACTCTCAGCGATTTATCGACTGCATCACCCTCATGTTTAAGACCACCTCGCCCATGCTGTACTTACCCCCAGGCCTGCTTCGGCCTATAAGATCCAAAATCTGGAGGAACCACGTTGAAGCCT
GGGATGGTATCTTTAACCAAGGTAACAGAACGCTACAGCTGTTAAATAAAATTATTGTTTTTAATTTGCTGTTTTTTTTTCCTTGAAATCCACCTTGATTTTATATCCCATGTGAATTTTCATAGCTGACCGATGTATCCAGAATATCTACAGACAATTGCGGAAAAACCCCGAAGGTAATGGGAAATACACTGGTGTGCTGGCAAGCCTTCTAATGCTGGACAAACTGTCCATCGAGGACATAAAGG/- CCAGTGTCACTGAGCTGATGGCTGGAGGAGTGGACACGGTATGAAAATATAGAAATCCATAAATTCAAAGTTCATAAAGGACACCAATATACTTAAACACCACAATAAATGAGCTGGTGAGGTTAAAACCTGCTAAAGATGCTGGTTTGAATCTGGCTCAAAATGGACCAAGTAGAATTGAAGGGGTAACACTGGTTTTGTGACCCAGATGGGAGTGAGGTTTAGGAGGCTGAGCTTATTTATTACCATTTATTTTCAAAACAGTGAATTCTACTGACCCCATACTCCCATGCGCTCTGTTAAGGGCTGTCTTGTACTTGTATGGACAGAGTAGGAGTTTGGTTTGCATTGCCGGCAATACTTCAGACTGGTTTCCAGTGCTATTTGGACTCAGGCAGGGTTGTCACCATTTCTGCTCATAATTTTTATGGACAGAATTTCTATGCGCAGCCTTGGGCTGGAGGGGGTCAGGTTCAGGGACCACAGGATTATAGCTCTGT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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