Genomic Feature
um307
- ID
- ZDB-ALT-200928-1
- Name
- um307
- Synonyms
-
- 442 bp deletion (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Lawson Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 11: 3852334 - 3852775 (GRCz11) (1) Details
- Nucleotide change
- GCCAGTCGAGCATGACAAACAAGAGAGCAAAGAGTATAAATCCATTTATTTTCCAATCCCTGCCCCAGCCCCTTCACACATAGTGCTCTGATAATCGCTTTACAGTAGATGTCATTCGGGCCTGCCGGGGCCAGAGAAAATTCAGCCGGGTTTGTTGAAGACGGAAACACCCGGGAGCCTGGCTTCCTTATCGGGCCCGGGCAGATATCCGGATAGGAAACAACTGGATGGCCTTTGAACAGCGCTCTGAAAACACTTCAACCCAAAATGCAAAAGCATGGGCCAGCACACTGACTCCATGGAAAACCCTGTGGCCCTTTACTATGAGAACATATAGCTAGAGAAAAGCAGAAATTGCTGCTAAAAATAATAATGATCACCACAACATTCTCAACAATCACCATAATTTAATTCCTTTTTGAATATGTAACTCCAGCTGAGT/-
- Variant Notes
-
This mutation deletes conserved intron 4 enhancer elements.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 442 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AGCCCATTCTGTGCATTTAAACACGCTAAATTCAATTTTCCAATTTGTGCCTTGATTAGAAAAAAACTGTGCCCGATGAAATTCGTTTTTCCCCTGACCTTCATCTAATAAATTCTGCCATATTTCAGCTAAATGCATTAGACAGATCATTAATTTATAACGTTTCGATACACTGCTCCCCTTCATGCCACGAATCAAACGCTTTCAGTGGGCGGGGCGACTGCAAAAGCCGGGTCATCAATCCTCTGTTCGCTTTTTTGTCCATTGCGGATCAATTTTTCACACATAATGAGAAACATTTATAGGCGTACAGCGCAATTCCCCTGCAGTCCAACACGTATAGCGTTTGCAGTTTGTGTTCATTAACGATTTACATATTAAATTCTATTGCCTTTTTGTGCCGGATAAAACAAAATGCCGCTTTGGATAAAATGAAACAAAACGCAGACGACAACAAACACACACACACACACACATGCATTCCGATGCTTCAACTCAGT
GCCAGTCGAGCATGACAAACAAGAGAGCAAAGAGTATAAATCCATTTATTTTCCAATCCCTGCCCCAGCCCCTTCACACATAGTGCTCTGATAATCGCTTTACAGTAGATGTCATTCGGGCCTGCCGGGGCCAGAGAAAATTCAGCCGGGTTTGTTGAAGACGGAAACACCCGGGAGCCTGGCTTCCTTATCGGGCCCGGGCAGATATCCGGATAGGAAACAACTGGATGGCCTTTGAACAGCGCTCTGAAAACACTTCAACCCAAAATGCAAAAGCATGGGCCAGCACACTGACTCCATGGAAAACCCTGTGGCCCTTTACTATGAGAACATATAGCTAGAGAAAAGCAGAAATTGCTGCTAAAAATAATAATGATCACCACAACATTCTCAACAATCACCATAATTTAATTCCTTTTTGAATATGTAACTCCAGCTGAGT/- ATGTAAGAGTCTATTTTACAACAAGATTCCCTCAGAGACGTTTATATTTACACTCTGACGGTCACTTAGCCAAGGGAAAATTAAATTATGACACATGGCTGATAGAAAAAGACAGTCTCACTCAATTAAATCGCTTGTTGTGTCTCTAAATGAATCTCCACGATAGTATTACATCACTTTTTGAAAGGGTGACTCAATAAGAGAGTAAGGAGACAGAGGTTGAACTATAGAGTTTCAGCCACTAAAGGATAAAATAAGATTACGTTGATAGAAAAAGCTTTGGTTTTGGGAAAATATCCTTCCATATTCTTTGAAAAGTCATGTTTTTATAGGATCCCGATGCTGGAAAAGCTGTCACCCCTGCCCAGGGATACTATTTTATTGCAACAAGATATTTATATTTGAATAAATGAATAAAGGAGTCTTCTTTTACAGCATGTCCGTGAACCGTGGAACAATAGCAGATTAATAACCAGAGCATAATCGGGTTTGACTCTTCA - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None