Genomic Feature

vp34rc1

ID
ZDB-ALT-200310-2
Name
vp34rc1
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Parichy Lab
Current Source
Other Pages
Notes
Comment Citation
This mutation was created in fish doubly homozygous mutant for thraa (vp33rc1)  ... Saunders et al., 2019
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 19: 17524376 - 17524418 (GRCz11) (1) Details
Nucleotide change
GCTTTGTCTCCACAAACAACACACAGCTCATCCTTGTCCAGGT/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
43 bp deleted (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ACTGACTGACTGACTGACTGACCGACACCCCCACACACCCCTATCCCTCAACCCAACCAATAATGTTTTAAAACGCACAGATTTACCTGTAACCACCCACTTCCCTACACCCAACTGACAGTGTTTTCCTAAAAAAGATAAGCCCTTATAGTAGCCAGATTTTACCACATTTTCACGCTCTTATTTACTAGTTTGTTTTACCTTTCTTTCTGAAACTATCATGCTCAACTCCGCTCTGCATCTCAAATCCTCCAACGTACACAGCAAGCCACTGGACAAACTGGTAACAGCTGAGTTGCGCACAAAGAAACGGCGTCATACCACCCCGTAGCATTCATTTTAAAGATGAAACGCATCCATATGTTTCTCTGGCTACATAATTTGCTATCTCCAGAAATAAAGGAGTACGTTTTCAGAATAAGCCAATGTTGCATAGGGCAAGAGAAAAAAAACTCACTTTGCAGCCCTCACATGTAATGCAGCGATAGTGATAACCAGTT
GCTTTGTCTCCACAAACAACACACAGCTCATCCTTGTCCAGGT/- AACTTGGTATGTACCCTGTTAGAGTAACAAACACAACCCATTAAAACGAAACACTTGTCATAACACCATAATAATCATGACATGATTCATGTAATAAATATGAAACAGATTTTATTCTTTATTCTGCATTCTTATGAAAACTTTATGTTAAATGTCAATCAGTTTATGTCATTTTAAATGCAAAGATGACTGATTTATTGAGATGTCTTTTTCATGACAACAAAACCTGTTAGTGTCTTAGTCATGACAATGTGACATTACCAAGACAACAGACCTCGTCATAAATCTGTTATGAACATGATTGTTATGATGAGGCTATTCTACTGTAATTTTGTATGAATATTTTTCAAATCACTTATTTTTTCCAGTGGAACAACTAAATACGTAATTTAATGACTCATTAAAAGTGCCAATACTCTTGTCAAATAATTTTAAGCATCATTTTAACAGCATCATTGATATTTTTCATGATCTCTACAATAGTGGTACAAATTTTATTT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations