Genomic Feature

a371

ID
ZDB-ALT-200122-2
Name
a371
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Schier Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 16
Variants
Variant Type
Small Deletion
Variant Location
Chr 16: 45625036 - 45625275 (GRCz11) (1) Details
Nucleotide change
CCATCTCTCTTTGTCATTAAAAGGACAACAGTCGGCGTGTCGACAACGTCCTGAAGCTGTGGATCACTTAAATCATCTGTACAAAGAGACGGACAAGAAGAGACGCAAGGTAAAATATTCAACTCAAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
154 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TATTAAGTAAACAAACTCATTCATTCATTCATTTTCCTTCAGCTTAGTCACAACGAAATGAACCGATAACTATTCTGGCATATGTTTTATGCAGTGGATACCCTTCAAGCTGCAGCTCAGCACTGGGAAACACCCATACACTCTCACATTCACACACACCCTCATACACTATGGCTAATTCAGTTCATCCAATTCACCTGTAGCTCATGTCTTTAGACTGTGGAGGAAACCGGAGCACCCGAAGGAAACCCACACCAACACAGGGAGAACATGCCAACTCCACACAGAAATGCCAACTGGAAATCGAACCAGCGACCTTTTTGTTGTGAGGCAACAGTGCTAACCACTGAGCTACTTATAAAGTAACTAATCGCCTTTTACAGTGTGCCATAAAATATGAACAGTGGTGCATTGTCACTGCAAAGCTCTATACAGTAGTACATACAGTATACAGTGCACATATGATTCTGCTGTTTACCATCTCTCTTTGTCATTAAAAG
CCATCTCTCTTTGTCATTAAAAGGACAACAGTCGGCGTGTCGACAACGTCCTGAAGCTGTGGATCACTTAAATCATCTGTACAAAGAGACGGACAAGAAGAGACGCAAGGTAAAATATTCAACTCAAG/- GTAAAATATTCAACTCAAGATTAATTCTTTAAGGCTGCTGTTTGGTGGCTGTCTTATATTATTTAGTCTATGCTAAATAGAAAATACCATGTATATACACTTACAGGCCACTTTATTAGGTCCAACTGCTCGTTAACGCAAATTTTCTAATCAGCCAATCACATGGAAGCAACGCAGTGCATTTAGGCATGTAGACATGGGCTGCATCTGAAACCGCCTACTACTCAGTAGGTTCTGCGTTTGAATCGTCGTTAGAAAATTACGTTCTATACAAAATGTATAGAAGTGAAAAGTATGAATGGAATTCAGACGTACTACATCCGCCATTTTGTCATGGTCACCGAACCTACCTACGTCAGTTGCGTCACTTCACTCCCATTCATGAATTCTCTCGCGGGGCATCATGGGATAGCGCAGTGTGCATGGAATACACACTCCAGAATCTCGCCGGAAGTAGTAAATTATCCGGGTACTTCTCGCATACTGATTTTCGAATTCTA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
syngap1ba371/a371Homozygous♀+/- ♂+/-Fig. S4 from Thyme et al., 2019
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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