Genomic Feature
zju126
- ID
- ZDB-ALT-190926-11
- Name
- zju126
- Synonyms
-
- d17 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Jun Chen Lab
- Current Source
- China Zebrafish Resource Center (CZRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 9: 34913120 - 34913136 (GRCz11) (1) Details
- Nucleotide change
- CTTTTGATAGACTGGGT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 17 bp deleted (1)
- Transcript Consequence
- Frameshift (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GGTCCCAGCTTTCGCATCTTTCTTCTTTAGCTTTTTCTTGGAAACCTTCTGAAATGGGGCAAATTCTACAACAGCTGGATATTCTTGACCTAAATAAACAGAAGTAAAATAAATGTTATACTAATCTATTATATCATATGTCATAATAAAAAGTAAATATCCTAAAGTTATAGTCAGAAAATATTAGATTCAATGAGGATACATAGAAAAAAAGCAGAAAGCAAATCACCTTTATTGTCAATAAATACATAGCCATCAAAGCGATCTCTGAATATTATGATATCCTCTGGGTTTTTGAAGTTTATGTATGCTCTTGAGAAGAGATGAGGGTATAAGCTGGGGAGAATAAAAATATATCAAATATGCACATGTAAATTACACTGACAGCACTCATGATCATAGTATTTCTATATAAACAAAGTGGACATACCTCTGATCAGCAGGAAAGAACTCAAAATAGTCAAAAGATGGAAGAGGACTCAGATGCTCCTGGAGCTGGT
CTTTTGATAGACTGGGT/- GGCAGTCGGCGGATGACAACCTATATAAAAGAAGAATAAAAGAAGTCTGATAATACTGAAAACAAGCTTATTCAAGTTATTAAAAAATGAAGAAATATTACTATATTATCAATGAACTATAAAGTATTTCATAATGATAATATGGTAATAATAATAATGCATTATTATTATTATTATTATTATTATTTTATTTAACAACAGGACATATGTAACAAATAATTATAATATTTCTGGTTTACAAAACTGACCACTTTTTAAAAATAAAATTATCAAATTTTTAAGATAAAAACAAAAATATTCTTGTTCAGATATGAAAATATCACTGAAACCTTATTAGTTATTAAAAAACAGACAGGCATGTAAGAATTTTTTGTGAGTGTAAAAACTTTTTACATTTTATTCATTTTATGTAGGCCTACTGACCTTCAAAAGCTCTCTCGGAATACAAACTAAGTATATAGTAAACTAAGTATAGCATATACAGTTGAAGTCAAAATTAT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| upf3azju126/zju126 (TU) | Homozygous | ♀-/- | 2 figures from 2 publications | Fig. 2 from Ma et al., 2019 | |
| capn3azju119/zju119; upf3azju126/zju126 | Complex | Fig. 2 from Ma et al., 2019 | Fig. 2 from Ma et al., 2019 | ||
| upf3azju126/zju126 + CRISPR1-cldn3c (TU) | Complex | Fig. 6 from Jin et al., 2019 | |||
| upf3azju126/zju126 + CRISPR1-cldn7b (TU) | Complex | Fig. 6 from Jin et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- Jin, M., Wang, D., Xu, W., Wang, H., Cao, Y. (2019) Claudin-7b and Claudin-h are required for controlling cilia morphogenesis in the zebrafish kidney. Mechanisms of Development. 161:103595
- Ma, Z., Zhu, P., Shi, H., Guo, L., Zhang, Q., Chen, Y., Chen, S., Zhang, Z., Peng, J., Chen, J. (2019) PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components. Nature. 568(7751):259-263
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