Genomic Feature
ir1091
- ID
- ZDB-ALT-190715-7
- Name
- ir1091
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Schilling Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 23: 6640458 - 6640482 (GRCz11) (1) Details
- Nucleotide change
- GCCGCGGCTCCTGCCATGGCCCCCA/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 25 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AAGATAAACAACATGATACATGTTTGGTGTACTGCCTACTTAGTGCTTATACCTGCCTAATATAGTACTTATAACACGTTTGTACTGAAATATTGTTTCTCACCCCCATCAGGTGGCCCATAGTAACAGAGAATCCAATGGACAGAGCAGCAGAACCCAGACGTCCATTTCTTCTTTCATCAGTGACAGCGAAAACGCAGACCACCAACTGCATAGTGAGGAACACCTCCACTGTGGTGGCCATTCCCAGACTCATGCCAGGCTGAAGCTGGAGAGAAACATCAACAGGTACAAAAACGAGGAGGAATTAACGTTTAAAAGTCCTATTTTTTTATGTGTATGAATACAACAAATAGAGATTTTATACATTACTAAATCACATATTTGCAAAATAGTTTTGTTTTAAACTTTTAATGAAATAAAATACAATTCCCGGTGACATTCTTACCGTGTTAAGTGCCATCGTGCCCCTCATGTTGTTGGGTGTAACTCCGTAGAGC
GCCGCGGCTCCTGCCATGGCCCCCA/- GACACTGAGCACAAATGTAGAAGAAAGCTCTGAACACAGACATCTGAGAGCCGACTAAGTATGCAAAGGTGACAGCCGGATTAATGTGTCCTCCGCTGATGTGGCCGATGGATTGAATGAGTGTGGCAGCAGCAAAACCAAAGCAGAGAGCAGTGTGGAAGACATGGTACGGCCCGGTGGTCCAGCGTAGAGCGGCACCCATCCCGAAGAACACGAAGAACATGGTGCCGAAAAACTCGGCAAACACCGCCCTCCAAAACATCATAGAGCGAAACTCCCACATTATGATTTATGAGTCCCAACTAAATTCAAAACCGAAACTTTTTTGTTTGTTTTTTCGAGTTGGCAAGAAAAATGTCTTTAAAAAAAATAAAATGTCCTTTTTTTTTGCCAAGTACACTAAAAGTTCCTCAAAAACAGATCAATAATTAGGCCTAATAGATCTAGCCGTTAGCTAAGGCTGTGTGGGAAGCCGTGAGTAAATGGTCACACATGTAGCC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| mipbir1091/ir1091 (AB) | Homozygous | ♀-/- ♂-/- | 8 figures  from 2 publications | 2 figures from Vorontsova et al., 2018 | |
| mipair1090/ir1090; mipbir1091/ir1091 (AB) | Complex | 10 figures from 2 publications |
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Supplemental Information
- Genotyping protocol
- None
- Vorontsova, I., Vallmitjana, A., Torrado, B., Schilling, T.F., Hall, J.E., Gratton, E., Malacrida, L. (2022) In vivo macromolecular crowding is differentially modulated by aquaporin 0 in zebrafish lens: Insights from a nanoenvironment sensor and spectral imaging. Science advances. 8:eabj4833
- Wang, K., Vorontsova, I., Hoshino, M., Uesugi, K., Yagi, N., Hall, J.E., Schilling, T.F., Pierscionek, B.K. (2021) Aquaporins Have Regional Functions in Development of Refractive Index in the Zebrafish Eye Lens. Investigative ophthalmology & visual science. 62:23
- Vorontsova, I., Gehring, I., Hall, J.E., Schilling, T.F. (2018) Aqp0a Regulates Suture Stability in the Zebrafish Lens. Investigative ophthalmology & visual science. 59:2869-2879
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