Genomic Feature

um239

ID
ZDB-ALT-180814-3
Name
um239
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Sagerström Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 25
Variants
Variant Type
Delins
Variant Location
Chr 25: 18327622 - 18329887 (GRCz11) (1) Details
Nucleotide change
GCAGGACCTCACGTGGACTCGAGAGGGTCCAACTGAAAAACGTTGTGATTGGTTGGTGTGGTGAAGTACAGTGGCTGGGTTGGGGCCGGCACACGGTTATCACACGGACTCTTGAGTCCTAACGTGCGCTCAAAGTCCAAGAGTTGACCCATGAAGTTAAAGTTGGGCGAGATGTTCGACTTCTTCATTTTGACAATGTCATAAGCATCGTTCATGGACAGGTTGAGCTTCTGCATGAGGTACGCCACTGTTACAGTGACAGAACGACTGATGCCTGCAAGGCAGTGAACAAGCACGCCACACTTCAGTCCACGGGCCTCATCTGAGGGAAAAAAAGGACAAGATGATTAGTTATCTGTGTGCAACTTACTTATGAATATGCAATTGCACATAACCTCGGTTGTCAGAATTCATTACACTCCCTGCGCTGACAAAGGGGGCCTCATTCAGTGGGATTTCTAGTGCATGACTGAAAACAACTCGCCTATTTTGTCTGAGAATGTGACGTGGAAATGGGCTGTTAAGGTTAATCAAATGATCCTTCCGCTCGTCAGGTTACTTGACAATGGTACCATTTGGGCGTGTAAATGTAGAAGTCATGGCAGCGCCCTGTCAAGGCTAACAGGATGTCAACAGTGCCCTGTAAATGGTCCTCATTGTGTGGCGAAACATTGCTCTGTCCTAGATTACTTTCAATGCTGCTTGCTTCCTTCCTGTTGAGCTCAAATTACCGCCTCCCCCCTCCATCTCCCGTTTCATCATAAGCCTTTGTGTCACAATTGCACAACCGAGGGATATGTTTCAATGCTAACAATAAAAACACTAAAGACACAATATTTTTAATCAAAACTGGGAATGCATGAGGAGCAAATTAAAATTTGATTCTTACCAATAAAGCTGATGGCTTCAGGGAAAAACTGTGAGAGGTTCTGGCTCCAGTGATCAGAGATGGGAATCTGCTTGTACTTAAACTCCCCGGCATTCTCGAACATGTTGGGGAGATTAGGGGTCACGTTCAAGATGTACTTGATGCCAAACTCCTCCAGGATATCCAGGTTTGTGGAGTCCTTAGCACAGCCCAGATACAGATGTGGAAGGATCTCCACGGGGAATGAGGGCTGGGGGTTGGAAAGGGGGCTGCCATCTGAGTCAGTTGCACTGCTTGGGTCTCGGTCGATATCCGACTCGATGTCCGAGGAGTCAGAGCTGATTCTGAGCCCTCCGAGACCCAGGACCTGGGAGGTTGGGGAACTGCTGCTTGAGGAACCGTCGAGGTTCGTCTCACACATTGCGGGAAAATCAGTTTGAAATTTGCTGAAGCCACCTGAAAATAGAAGTTAGAAGTTCTTTTACATCTGATGCATATTTATTTTTCATTTTAGTGGTGACTAATATCTTTGTTTCACTCTTAGCCATTCATTATTTTATTGCCTACTATGAACTATTTAAATATTAAATCCTGTTGCAACACAAATAAAGTATTGTGTTTATTGTTATTACTAGTTGCATTTTCAGAATGATTAATCCTTGATTTTGATGCAACTATGAAGCAGCCATTAAAGTCAGATGCAAATGTTACTGGGGAAATAACAAAACGTGACTAGTAGGAACTGCAACATGTAATTGTGAATGTGTCCACATTAGAAATGTAGAGAAATTATATTTTTGATAGTAACTGCAAATGATATTCTTAACCTCACGACTAGTTGTGTTTAACCAATTACGAAGTAGCCATTAAAATCAAAATGCAACTGGTGACACAAGCAATGCAAAATGGTAGCTTCTCTAGTATTATTAGCTCAACCTTAGATTTCCATCAAATTCAGATTTGAAACATACAACTAGTAACAAATCAACATCATTAAACGAATAGACATTAGTTAATACAAGTACTAAGTATATAATAAATGTCTGCAAGTAAAACTAAAAGACGTAATAATGACTACTACTGAGTAATTAAAAAATATTATAACCTAAATCAGATACGAATGCAAATGTTTCGATTTAAGAAGCAAAATCACCAAACTCGTTGGGAATGTACGTACCCTCGAGATAGAAAGCCTTGTAGCCCTCGTCCTTCATTCTCCTCAGCAGTAAACCCAACACGGAGCCGCCGTCGATGTTTTCATTCCACTCGCGGCTGTACTCGTCGTACAACACGATCGTGTCCGTCTTGCATCTCCGCGCGAACCTTTCCCTGTCTTCCCCGTTAGAAAGCAGAGACTTGATGGGCAGGTTGCCTTTCTTGAGTCGCCGGAGCATGAGG/TCT
Variant Notes
predicted 63-amino-acid protein with no known protein domains
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
3 bp inserted / 2200 bp deleted (1)
Transcript Consequence
None
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
ATAAATGTTGTCAAAAATTTCTCCACGCAAATAAGTTGGAGTACAGTACACTCTGCCATCATTACCGAAGGGAAGTCTCGTCCCAAAAACAGGCAAGTCTTCATTGAAGACAAGAAGGGCACACCTAGAAAACATCAAGGTGCAAGTGCTAAACAAAACAAATGAGTATTTGTCATTGTTCAGTTCCAGTCAAGTCTCTTTGGCACACCAGCCCCAATAAATCGGATGCTCTTTTCATTTCCACAGTCTTTCCATGCTTAAATATGTATATATATATATATGTATATATATATAAAACAAACTACTTTGAAGAGTCTTGGAGATTTAGAGTCACATGATCTCTCTCCATTAAACAGCAGCGTAGAAGCTCTGGGCACACCACATGCCCCATCAGTGGCTACTCTGGTCGGCCGTCGTCTCAAGCCAACATCAATAACGTCAGGAATCCCTTGACTAGAGTCGAAAAACAGAAACTTGCATTTCACTCGAATCAAGTCATG
GCAGGACCTCACGTGGACTCGAGAGGGTCCAACTGAAAAACGTTGTGATTGGTTGGTGTGGTGAAGTACAGTGGCTGGGTTGGGGCCGGCACACGGTTATCACACGGACTCTTGAGTCCTAACGTGCGCTCAAAGTCCAAGAGTTGACCCATGAAGTTAAAGTTGGGCGAGATGTTCGACTTCTTCATTTTGACAATGTCATAAGCATCGTTCATGGACAGGTTGAGCTTCTGCATGAGGTACGCCACTGTTACAGTGACAGAACGACTGATGCCTGCAAGGCAGTGAACAAGCACGCCACACTTCAGTCCACGGGCCTCATCTGAGGGAAAAAAAGGACAAGATGATTAGTTATCTGTGTGCAACTTACTTATGAATATGCAATTGCACATAACCTCGGTTGTCAGAATTCATTACACTCCCTGCGCTGACAAAGGGGGCCTCATTCAGTGGGATTTCTAGTGCATGACTGAAAACAACTCGCCTATTTTGTCTGAGAATGTGACGTGGAAATGGGCTGTTAAGGTTAATCAAATGATCCTTCCGCTCGTCAGGTTACTTGACAATGGTACCATTTGGGCGTGTAAATGTAGAAGTCATGGCAGCGCCCTGTCAAGGCTAACAGGATGTCAACAGTGCCCTGTAAATGGTCCTCATTGTGTGGCGAAACATTGCTCTGTCCTAGATTACTTTCAATGCTGCTTGCTTCCTTCCTGTTGAGCTCAAATTACCGCCTCCCCCCTCCATCTCCCGTTTCATCATAAGCCTTTGTGTCACAATTGCACAACCGAGGGATATGTTTCAATGCTAACAATAAAAACACTAAAGACACAATATTTTTAATCAAAACTGGGAATGCATGAGGAGCAAATTAAAATTTGATTCTTACCAATAAAGCTGATGGCTTCAGGGAAAAACTGTGAGAGGTTCTGGCTCCAGTGATCAGAGATGGGAATCTGCTTGTACTTAAACTCCCCGGCATTCTCGAACATGTTGGGGAGATTAGGGGTCACGTTCAAGATGTACTTGATGCCAAACTCCTCCAGGATATCCAGGTTTGTGGAGTCCTTAGCACAGCCCAGATACAGATGTGGAAGGATCTCCACGGGGAATGAGGGCTGGGGGTTGGAAAGGGGGCTGCCATCTGAGTCAGTTGCACTGCTTGGGTCTCGGTCGATATCCGACTCGATGTCCGAGGAGTCAGAGCTGATTCTGAGCCCTCCGAGACCCAGGACCTGGGAGGTTGGGGAACTGCTGCTTGAGGAACCGTCGAGGTTCGTCTCACACATTGCGGGAAAATCAGTTTGAAATTTGCTGAAGCCACCTGAAAATAGAAGTTAGAAGTTCTTTTACATCTGATGCATATTTATTTTTCATTTTAGTGGTGACTAATATCTTTGTTTCACTCTTAGCCATTCATTATTTTATTGCCTACTATGAACTATTTAAATATTAAATCCTGTTGCAACACAAATAAAGTATTGTGTTTATTGTTATTACTAGTTGCATTTTCAGAATGATTAATCCTTGATTTTGATGCAACTATGAAGCAGCCATTAAAGTCAGATGCAAATGTTACTGGGGAAATAACAAAACGTGACTAGTAGGAACTGCAACATGTAATTGTGAATGTGTCCACATTAGAAATGTAGAGAAATTATATTTTTGATAGTAACTGCAAATGATATTCTTAACCTCACGACTAGTTGTGTTTAACCAATTACGAAGTAGCCATTAAAATCAAAATGCAACTGGTGACACAAGCAATGCAAAATGGTAGCTTCTCTAGTATTATTAGCTCAACCTTAGATTTCCATCAAATTCAGATTTGAAACATACAACTAGTAACAAATCAACATCATTAAACGAATAGACATTAGTTAATACAAGTACTAAGTATATAATAAATGTCTGCAAGTAAAACTAAAAGACGTAATAATGACTACTACTGAGTAATTAAAAAATATTATAACCTAAATCAGATACGAATGCAAATGTTTCGATTTAAGAAGCAAAATCACCAAACTCGTTGGGAATGTACGTACCCTCGAGATAGAAAGCCTTGTAGCCCTCGTCCTTCATTCTCCTCAGCAGTAAACCCAACACGGAGCCGCCGTCGATGTTTTCATTCCACTCGCGGCTGTACTCGTCGTACAACACGATCGTGTCCGTCTTGCATCTCCGCGCGAACCTTTCCCTGTCTTCCCCGTTAGAAAGCAGAGACTTGATGGGCAGGTTGCCTTTCTTGAGTCGCCGGAGCATGAGG/TCT CTCGGGATGGCCACGTTAATGGCCGTTTCGACGTGCGACGACTCGTACAGCTCTTGCGCTCGGCAGTCCATAACGAGCAA  ...
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
dusp6um239/um239Homozygous♀-/- ♂-/-2 figures with image from Maurer et al., 2018Fig. 6 from Maurer et al., 2018
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Supplemental Information
Genotyping protocol
None
Citations
1 - 1 of 1
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