Genomic Feature

w144

ID
ZDB-ALT-170921-19
Name
w144
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
David Raible Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 13
Variants
Variant Type
Small Deletion
Variant Location
Chr 13: 45154979 (GRCz11) (1) Details
Nucleotide change
G/-
Variant Notes
truncation of the mutant protein is in the Runt domain
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1 bp deleted at position 247 in Exon 3 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation: at position 101 (1)
Sequences
Flanking Sequence
TGTCGAAACATCTCTGACGTGATTGACATCTGTTCAAATCATCAGTCAAGCAGTAAATTTGCCTAGTATGTTGATGATATCAGAAAATATATGAAATTAGCAAGTGTTTTAATTTTGCAGTTGCTATCAGGTGAGTTGACATTTTAAAAACATCTCCACAGTAATTTCTTATTGATTAACTTGTGTTCTTGGCACGCGCAACCAAGTTGTCTTTTGGCGCCCCTATATCAGTTAACCAAACATCAGCTAACTAACACATCTGTAAAAACACATTTTGCTATAAATTTATGCTAAGTAAACAATTAAAATAATTAATAAATACAAACAATAGTAGTTTAGTGATGTACCACTCGTCAAAAGTGCTAACGGAAAACTCTGTTGCTATGGTTATCGCTTCAGAAGAGCGCGAGTTCTGTTTAAAAGTAGCTAGATTTCTGACAAAGCCAAGAAATTAGTCAATATTACAGATAGAAGTGTTTTATTTACCTTAAACGCCACGG
G/- AAGGGTTTTGTTGCACCTCCAGTGAGACGGCAGGACCGAGCAGAGAAAGTTTGGGCTGTCCGTGCGCACCAGCTCTCCGGCGTGATCAGCCAGCACGTCCACCACGGAGCGGCTCTCCACGGGCCGGCCGGAGCGCAGGGGGCCCGGCGCGCTCATGCTCTGGCTCTCGGTCACTTTAGCGCACGGGAACGAGGCGGAGGGCGGCGTGAACCGTCTGCTCGTGCTCGGGTCTACGGGAATATGCATCACAACAGATTTCAAATGAGTCCTCGTGAAAAGCTCGGGCAACCCAGTTGGTTGAGTAGGCTACAGAAAGTCCGTTGTGTTGGAGAGTGGAAAAAACTCCTCGGTGACCGTTTACTTTGTGTTGCAATGCAGATGCAGAAGCGTTAATACAGAGCGAGTTCCCCACTGACTTCAGCCACACACACACACACACGCACGCACAAACAATCTCGTGCTGCACGATAGATGAGAGTAAGGCATAAAAACAGAGTCTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
runx3w144/w144 (AB)Homozygous♀+/- ♂+/-Fig. 9 from Gau et al., 20176 figures with image from Gau et al., 2017
runx3w144/w144; a129Tg (AB)Complex2 figures with image from Gau et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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