Genomic Feature

sw40

ID
ZDB-ALT-111220-1
Name
sw40
Synonyms
  • testicular germ-cell tumor mutant (1)
  • tgct (1)
Affected Genomic Region
Construct
None
Type
Allele with one point mutation (1)
Protocol
adult males treated with ENU
Lab of Origin
Amatruda Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Point Mutation
Variant Location
Chr 10: 1094497 (GRCz11) (1) Details
Nucleotide change
C/T
Variant Notes
G-to-A transition that introduces a premature termination codon, predicted to  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
G>A (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation: Trp>Stop at position 256 (1)
Sequences
Flanking Sequence
TGGTGCGGTGCGAATGACGCAGTATGCACGAATTGAGCGTTTTTCGCATTTGACGCGTGTTTCGCACAAGTTGCTACCGTTTGAAAATTTGAACTTTAGTGGACATTCACGCTGCGTTAACCAATCAGGAGCTTGCTCTTGTGGGGGTGTGATTATGACGTAGCGCCAGTTGTTGGTGTCCCGGGGGAAAATTTCCATAGCTATAACCATTATAATTCTGCTAATAATTACGCCATAACGTTGCTATAAAACCCGAAACTAAAACTGAAATAATTTCATAATAATTAATGAATGAATATGAGCTGCATATCGAATTGAAGTGGCATTCCTATATTGGTGTAGATATAGACAGTGTGAGTGTACGAGTGTGTGTGAATGCGTGTCTCCTCACCCAGTATGTTCTCGTGTCTCATCAGGACGGTCTGGTAGATCTCGGTCTCCCTGAACCAGCTGGCCTCCTCTGTGGTGAAGAAGACCTTCACAGCCACCCGCTCGCCCCT
C/T CAGCGGCCCATCCACACCTCCCCGTAGCGGCCCTTCCCGATCTGCTTCACCATCTGGATCTGCTTGGCGATGGTCCTCTGCACCTAAACCACACAGCGTTAGCATTAGCATTAATACCAGGCACCAGTTGCTCAAAAAGGTTACAATACACATGAAATCAGAACTAGCCGTATTGATGTTGTGAGCTCACATTGCTGAACGGTTCATCTGTGCTTGTCATTAAGAACAAAATAATAAATGTTTGTCCTTGAAAAGTAAGATTGAAATCTGATAATGCACTTCCTGTTTGTTTCCAGTTCAATTCTCAGATTGTGTCTGTCTGAGGTATTGGGTGTGGCTAACACACTTAACCACGCCCCTCCAGCTGTCAGTTTGACAGCAGCAGAGTGGTGAGCAGGAGGAGTCTGTTAGGCTGTAATAACTCTCCCTCATCTTTCTGAATGAAACGCCCACTTTACTACATCCAATCAGCTCACAGTAGAAAAAACAAGCCACGCCCA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations