Genomic Feature
vc7
- ID
- ZDB-ALT-110330-2
- Name
- vc7
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- Lab of Origin
- Lister Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 6: 43430033 (GRCz11) (1) Details
- Nucleotide change
- T/A
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- T>A in Donor Splice Site of Intron 6 (1)
- Transcript Consequence
- Intron Gain of Intron 6 (1)
- Protein Consequence
- Amino Acid Insertion: 39 AA added (1)
- Flanking Sequence
-
TGAATGCACAATATCAATCAAAGATGTATTATATTATTCAATAGTTACTCCATCTCCGGGCATGATGCACATAATGGACAAAGCTGGACCATGTGGCAAGTTTGACTCTTATCAAAGACCTGATGGCTTTCCAGTAGGTATGTTTTCCTTTTCTCAGCCTATGAAGGCTTTATGCATGAATAGTGTTATTCTTTGTTGTGTGTGGTACATTCTTTGATAAACTGAGATGCATATCAACAAGTTGCACATATGAAATTACATTGACATACATTTCAAGAAACCAAAATGGCCTTTGTATATAAATTTCACAAATTTCTTATGCAAAGCAACACTTTTGAATACATAGGCATCCTAAGCAAGAAACTGTGCATTCGTTTTGTAGTTTTAGTGAGAAGTTGACTGTGACAGTTATGAATGAAGTTAATGCAATGATTCATTTCAGAAGCAGAAGTCAGAGCCCTGGCAAAAGAGAGACAAAAGAAGGACAACCACAACCTCAG
T/A GAGTCTGATTATCACATTAAATGTTCATCACATTTCAAATATGTGATGAAACATCTTATTTTGTTTATTGTGCAGTTATTAATGATAATGTCTCGTTTTTTTTCATCCTTGCAGTTGAACGAAGAAGGCGGTTTAATATCAATGACAGAATTAAGGAGCTGGGGACTTTAATTCCCAAGTCAAATGATCCGTAAGTTTCAAAAACCACTCTATTAAAATTCAAATTTGATCTACTTCTTGATTTACTTAAGTCCAAATGTTATATTTTGGTGCCTGTGGTAAATAAAATTATGGATTAATAAATAAAAGTGATTTTATATATAGAGAAAACATTATAAATATTGTTCCATCATCATCAAATTTATAATATGGATATATTCTTTAAATAATTACATATTTGAATAAATATATAAAGAACAAATTATGATACTAAATTGTATTATATTTCAAATGAATAAAAACATTTAGATGACAAATAGGTAAAATCTAGTGGTATAGTA - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None
- Brombin, A., Simpson, D.J., Travnickova, J., Brunsdon, H., Zeng, Z., Lu, Y., Young, A.I.J., Chandra, T., Patton, E.E. (2022) Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential. Cell Reports. 38:110234
- Brunsdon, H., Brombin, A., Peterson, S., Postlethwait, J.H., Patton, E.E. (2022) Aldh2 is a lineage-specific metabolic gatekeeper in melanocyte stem cells. Development (Cambridge, England). 149(10):
- Travnickova, J., Muise, S., Wojciechowska, S., Brombin, A., Zeng, Z., Young, A.I.J., Wyatt, C., Patton, E.E. (2022) Fate mapping melanoma persister cells through regression and into recurrent disease in adult zebrafish. Disease models & mechanisms. 15(9):
- Eom, D.S., Patterson, L.B., Bostic, R.R., Parichy, D.M. (2021) Immunoglobulin superfamily receptor junctional adhesion molecule 3 (Jam3) requirement for melanophore survival and patterning during formation of zebrafish stripes. Developmental Biology. 476:314-327
- Gur, D., Bain, E.J., Johnson, K.R., Aman, A.J., Pasoili, H.A., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Lippincott-Schwartz, J., Parichy, D.M. (2020) In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning. Nature communications. 11:6391
- Johansson, J.A., Marie, K.L., Lu, Y., Brombin, A., Santoriello, C., Zeng, Z., Zich, J., Gautier, P., von Kriegsheim, A., Brunsdon, H., Wheeler, A.P., Dreger, M., Houston, D.R., Dooley, C.M., Sims, A.H., Busch-Nentwich, E.M., Zon, L.I., Illingworth, R.S., Patton, E.E. (2020) PRL3-DDX21 Transcriptional Control of Endolysosomal Genes Restricts Melanocyte Stem Cell Differentiation. Developmental Cell. 54(3):317-332.e9
- Allen, J.R., Skeath, J.B., Johnson, S.L. (2019) Maintenance of Melanocyte Stem Cell Quiescence by GABA-A Signaling in Larval Zebrafish. Genetics. 213(2):555-566
- Lewis, V.M., Saunders, L.M., Larson, T.A., Bain, E.J., Sturiale, S.L., Gur, D., Chowdhury, S., Flynn, J.D., Allen, M.C., Deheyn, D.D., Lee, J.C., Simon, J.A., Lippincott-Schwartz, J., Raible, D.W., Parichy, D.M. (2019) Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores. Proceedings of the National Academy of Sciences of the United States of America. 116(24):11806-11811
- Travnickova, J., Wojciechowska, S., Khamseh, A., Gautier, P., Brown, D.V., Lefevre, T., Brombin, A., Ewing, A., Capper, A., Spitzer, M., Dilshat, R., Semple, C.A., Mathers, M.E., Lister, J.A., Steingrímsson, E., Voet, T., Ponting, C.P., Patton, E.E. (2019) Zebrafish MITF-low melanoma subtype models reveal transcriptional subclusters and MITF-independent residual disease. Cancer research. 79(22):5769-5784
- Zeng, Z., Johnson, S.L., Lister, J.A., Patton, E.E. (2015) Temperature-sensitive splicing of mitfa by an intron mutation in zebrafish. Pigment cell & melanoma research. 28(2):229-32
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