Genomic Feature
jt5
- ID
- ZDB-ALT-010410-4
- Name
- jt5
- Synonyms
-
- j5 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- TMP
- Lab of Origin
- Mishina Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 16: 30415009 - 30415151 (GRCz11) (1) Details
- Nucleotide change
- TGTGCGAGGGACAACCTCCAGAGCCTGAGCTACAGCGCGGTACGGCCACTGCTCCACACCAGTCATAGCTCGAGAGCGCTCCGTCAGCCGATGGGACACCTCCATCTCCACTGCGCCACCACCCGGCAGCAGATATGGGTCCA/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 143 bp deleted (1)
- Transcript Consequence
- Frameshift (1)
- Protein Consequence
- None
- Flanking Sequence
-
GTCTCTGTATGTGTTCATAAATTGTTTATTTTTATAAATATAAATTGCAGATGTTACAGTAGGCTACTTCACTTTATTACTGATGTGCAACTATAATCGATCCTGTTCACAGAAAGATTAGTAATCAACTTTTAATTATTCATAAGTATTGATGTATATAAAGCATTTGTGTTTAGTAAGAAGTGCTTCTTACATGATATGTACACTTCAAGTGAGAAAGACAATTGTATCTGGACGTCGACTGCAACTTTCTGTCCATCACCACGCCTACCAAAAGGGTACCATAGCTACCCTTTAGCAGTTGAAAACACAAAACTGAAAAAAAAGTGACCCGAAACTAACCGTACCACTCAACGGAAACAAGGCATAAGTTAAACAGTTGTCGGGAGAGGCAGCAATCCACTAAATAAAAACAACAACGTCAATGTGTGCTTTCTGAATGGACGTACCCTCAGAGAAGTGAGCACACGAATGGCTGAAGCTCCACAGTTCTGGATGAG
TGTGCGAGGGACAACCTCCAGAGCCTGAGCTACAGCGCGGTACGGCCACTGCTCCACACCAGTCATAGCTCGAGAGCGCTCCGTCAGCCGATGGGACACCTCCATCTCCACTGCGCCACCACCCGGCAGCAGATATGGGTCCA/- GCAGGACATTACGACACACTTGCATGGCATCCTGTAGGTTTCGTTCCACTTCCTGAGAGAGCAGAGAAAGAGCATCAGTCAAACTTTGCGACAAGTCAATTATCCTGCACAAAATCCCTGGCGGAGCTGATCAAAGATTCAACAAATGGCCTGTTAAACTATCTCAGCATCTCCTCCTGAGAGACGACTGCTCTGACTGTGGAGACCTTTGTGAGACTCTTTATAACCATTAAAACACATTCTCATTAATCTTGCCCTGAGAGCTGCAGTCATGAATGTTTAACAATGGCCCCAAACTCCTGATATAGCTGGGGCTCGTTTCTCACCGCCAAGATTTCCTTGCTGGCTCCTCTGAGCAGGATGGTACATGCTTTGGGGTCTTTACACTCTGTCACAAAGGTGAAGTACTCGTCGCCGATCTTCTTGACTTCAAAAAGGCCTGCTCCTGTACCCACATCATCTTCAGTGAGCTCATCGGTTCTGCTGGCAATACGTGCACC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| cct3jt5/jt5 | Homozygous | Unknown | Fig. for (j5) from Phenotype Annotation (1994-2006) | text only from Matsuda et al., 2004 |
1 - 1 of 1
Show
Supplemental Information
- Genotyping protocol
- None
- Matsuda, N., and Mishina, M. (2004) Identification of chaperonin CCT{gamma} subunit as a determinant of retinotectal development by whole-genome subtraction cloning from zebrafish no tectal neuron mutant. Development (Cambridge, England). 131(9):1913-1925
- Ando, H. and Mishina, M. (1998) Efficient mutagenesis of zebrafish by a DNA cross-linking agent. Neuroscience letters. 244:81-84
1 - 2 of 2
Show