Transcript

lrig1-204

ID

ZDB-TSCRIPT-141209-3304

Name

lrig1-204 Nomenclature History

Previous Names

lrig1-004

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

lrig1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000169070 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000169070.2|gene_biotype:protein_coding|ENSDARG00000075625.4 transcript_biotype:nonsense_mediated_decay gene_symbol:LRIG1 cdna chromosome:GRCz11:11:16332824:16336886:-1
CAGAGATTTGAGGAGTGCGCACCTTTTACCAGCCCCAGCA
CTGTTACTGTAGGCATCATCATCATCGCTGTGGTCACCAG
TATTGTGGTGACTTCACTAGTTTGGGTGTGTATTATCTAT
CAGACCAGGAAGAAGAGCGAGGAGTGCAGTGTAAACACAG
ATGAGACGATTGTCCCTCCTGATGTTCCCAGTTACCTGTC
CTCTCAGGGCACTTTATCAGAAAGACAGGACGTGTGTATA
CGAGTGGAGTCCAATGGGGGATCTCAGCCCAATGGACGAA
TAGAAAGCAATGGCTACGATGTGCCGGTCGTGTGCGCAGA
CTGCTTGGAAAACAGCACCAGCTACTCCAAACACTGTAAC
TACCTCCCTCACGATTTAGCGCCCCCTTCAGGCATGGAGT
ATCAGCAGACGCACCAAACACCCATCTTTCCCACCAACCA
CGACAGGGTGACAATATCACCCTCATCAAACCAGTACAGT
GACCGAAATGATTTCTGATCAAGTTATGCCAGATTTATTA
ATGTAGTGAATCATCTGATTTTCATCGAGCAGGATTGTTG
GTGAACAAGTCAGACACACCACTGTCACTGGAGGAGTCGT
ACCATCGGCCAGTAAAACTGCTGTCTGAGGACTGTGACAT
TGGGTCAGAGCTCACACAGACTCTATTACCCAACGGACAC
ACACACGCGCCCAGTTCAGCTCTAAACCAGAGCCAATCCT
TTAGGCGGGACAGTGACTAACGCCACACCAAGCCTCTTCT
TGACATCCTTTTGCACTGAGAACTGCTACCTCACACTGAG
GGGCGCAGAAAAAACCCGCCCCGATTTTCTGAACAGAATT
AGGGGCGTCCGGAGTTTGAAGGTTATAAAGCTTGAACGGG
GCGATGACGACGTCCCATACGAGCGTTATTGATGTATATA
G

OTTDART00000061101 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000061101|OTTDARG00000042254|ZDB-GENE-031113-23 lrig1|OTTDARP00000047289 LRIG1-004 LG_none CR854847.7,CR339047.8 Danio rerio protein_coding KNOWN, 921 bp
CAGAGATTTGAGGAGTGCGCACCTTTTACCAGCCCCAGCA
CTGTTACTGTAGGCATCATCATCATCGCTGTGGTCACCAG
TATTGTGGTGACTTCACTAGTTTGGGTGTGTATTATCTAT
CAGACCAGGAAGAAGAGCGAGGAGTGCAGTGTAAACACAG
ATGAGACGATTGTCCCTCCTGATGTTCCCAGTTACCTGTC
CTCTCAGGGCACTTTATCAGAAAGACAGGACGTGTGTATA
CGAGTGGAGTCCAATGGGGGATCTCAGCCCAATGGACGAA
TAGAAAGCAATGGCTACGATGTGCCGGTCGTGTGCGCAGA
CTGCTTGGAAAACAGCACCAGCTACTCCAAACACTGTAAC
TACCTCCCTCACGATTTAGCGCCCCCTTCAGGCATGGAGT
ATCAGCAGACGCACCAAACACCCATCTTTCCCACCAACCA
CGACAGGGTGACAATATCACCCTCATCAAACCAGTACAGT
GACCGAAATGATTTCTGATCAAGTTATGCCAGATTTATTA
ATGTAGTGAATCATCTGATTTTCATCGAGCAGGATTGTTG
GTGAACAAGTCAGACACACCACTGTCACTGGAGGAGTCGT
ACCATCGGCCAGTAAAACTGCTGTCTGAGGACTGTGACAT
TGGGTCAGAGCTCACACAGACTCTATTACCCAACGGACAC
ACACACGCGCCCAGTTCAGCTCTAAACCAGAGCCAATCCT
TTAGGCGGGACAGTGACTAACGCCACACCAAGCCTCTTCT
TGACATCCTTTTGCACTGAGAACTGCTACCTCACACTGAG
GGGCGCAGAAAAAACCCGCCCCGATTTTCTGAACAGAATT
AGGGGCGTCCGGAGTTTGAAGGTTATAAAGCTTGAACGGG
GCGATGACGACGTCCCATACGAGCGTTATTGATGTATATA
G

Related Transcripts

Transcripts related to lrig1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	lrig1-204	Ensembl	921 nt
mRNA	lrig1-201 (1) Ensembl	Ensembl	7,283 nt	Select Tool
mRNA	lrig1-203 (1) Ensembl	Ensembl	416 nt	Select Tool
mRNA	lrig1-205 (1) Ensembl	Ensembl	2,997 nt	Select Tool ZFIN BLAST
mRNA	lrig1-206 (1) Ensembl	Ensembl	2,997 nt	Select Tool ZFIN BLAST
ncRNA	lrig1-003 (1) Ensembl	Ensembl	775 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations