Transcript

sv2-202

ID
ZDB-TSCRIPT-131113-932
Name
sv2-202 Nomenclature History
Previous Names
  • sv2-002
  • dkey-279i2.1-002
Transcript Type
aberrant processed transcript
Annotation Status
nonsense mediated decay
Annotation Method
Ensembl
Associated With Genes
Strain
TU
Non Reference Strain
Genome Resources
RNA Central
None
Note
None
Sequence
ENSDART00000170717 (1) [ Show ] (double-click sequence to select) [Download]
>tpe|ENSDART00000170717.2|gene_biotype:protein_coding|ENSDARG00000091833.3 transcript_biotype:nonsense_mediated_decay gene_symbol:sv2 cdna chromosome:GRCz11:25:6049614:6060712:1
ACAGAAGTACAGCAGAAAATTCCGTCTTCCGCTTTGCGAT
CATGTAGTTTACACTCGTAATTCTTTGATTATAAATATTA
ATATGCCTCGACAGTCTCGTGAGGATACAGAACCTCTGCT
ATCGTCCGCTAATAATGAGGAAGACGATGAGCAGGCGTCC
TGCAGAAAGAAACTTACATATGAGGAGGCTGTTGAGAAAG
CAGGGTTTGGTCTCTTCCATTGGCTGCTGTTGGTAGTCTG
TGGATGGGCAAACGCCAGCGATGCGGTGGAGATCCTGTGT
GTGTCGTTCCTGCTGCCCACGGCCCGCTGTGATCTCCAGC
TCAGCTCGGCCGACATGGGCATCCTCACCGCCAGCATCTT
TCTAGGGATGATGGTGGGCGGTTGTGTTTGGGGGTTTCTG
GCTGATCGCAGAGGAAGGCGGAGCGTCCTGGTGGTTTCTC
TGGCTGTCAATGGCACATTCGGGGCGGTGGCCAGTTTGGC
ACCAACTTTCTGGCTCTTTCTGCTCTTGCGGTTCTTCAGT
GGAGTCGGGGTCGGCGGCTCCATTCCTGTCATCTTCTCCT
ATTTTTCGGAGTTTCAGCCGTGTTTGCGGAGGGGGGCGAT
GATTAGTGCTCTGGCAACCTTCTGGATGGCTGGAAATATT
TTAGCTGCAGGCCGGACGTGAGATGGAGGCTTTGTCTGTG
TTCCAGAAGATATACAAACTGAACAACAGAGGTGCCACAA
AACCATTTCCTGTATCAGGGCTCATGATCAGACCTAAAGA
TGATGAAGTGAAAAACAGACCCAGCCACAGCAGCTCAAGA
TCACAGCGCTTCATCAATCAGCTCACACAGGCTCTGGTCC
CGCTGAAACAGCTGTTTGTCAGACCGCTGGCTTCCAGAAG
TGTCGTTCTAGTGATCATCTTTTTCTGCATCTCATTTGGG
TATTATGGGTTATGGATGTGGTTTCCGGAGCTTTTCAAGA
GGGCAGAAGATGGAGGTTCTCCATGTGCAAACATGTCTCG
AGCCCAAAACGCAGAGAACGAAAAGTGCTATCCAGTCAAA
ACCGCAGTGTACATGGAGGGGTTTATAACGGCGGCTTCAA
ACTTGCCAGGAAACATCTTCACTATTCTCCTCATGGACAG
AATCGGCGGGAAAATCCTTTTATCCGTTAGTTTGCTGGTG
TCCGGCGTGAGTGTGTTCGTCATTTACGTGGTGAAGACTA
AAACTCAGAGTCTGATCGTGTCCTGTGTGTTCAGTGGTGT
TTCTGTCATCTCCTGGAACGCTCTGGATGTCGTGGGGACA
GAACTTTACCCTACACAACTACGCTCCTCGGCTCTGGGGG
TCTTCACTGGAGTGGGTCGAGTGGCAGCCATCATGGGCAA
TGTGGTTTTCGGGCAGCTGGTGGACTCGAGCTGTGCCGTT
CCTCTGCTGATGGTGTGTGTGCTCCTGCTGGCGGGAGGAC
TGGCAGCTCTGTGGCTGCCTCAAACTAAACAGACTCAACT
CACATGATGCACACACACACACACATAGGCATTAAAAGAG
ATACAGTTGAAGTCAAAATGATTAGCCTTCCTGTAAATTA
TTTTGTCTTCAAATATTTCCCAAATGATGTTTAA

OTTDART00000056332 (1) [ Show ] (double-click sequence to select) [Download]
>tpe|OTTDART00000056332|OTTDARG00000039245|ZDB-GENE-000607-80 sv2|OTTDARP00000048647 DKEY-279I2.1-002 LG_ AL929134.21 Danio rerio protein_coding NOVEL, 1594 bp
ACAGAAGTACAGCAGAAAATTCCGTCTTCCGCTTTGCGAT
CATGTAGTTTACACTCGTAATTCTTTGATTATAAATATTA
ATATGCCTCGACAGTCTCGTGAGGATACAGAACCTCTGCT
ATCGTCCGCTAATAATGAGGAAGACGATGAGCAGGCGTCC
TGCAGAAAGAAACTTACATATGAGGAGGCTGTTGAGAAAG
CAGGGTTTGGTCTCTTCCATTGGCTGCTGTTGGTAGTCTG
TGGATGGGCAAACGCCAGCGATGCGGTGGAGATCCTGTGT
GTGTCGTTCCTGCTGCCCACGGCCCGCTGTGATCTCCAGC
TCAGCTCGGCCGACATGGGCATCCTCACCGCCAGCATCTT
TCTAGGGATGATGGTGGGCGGTTGTGTTTGGGGGTTTCTG
GCTGATCGCAGAGGAAGGCGGAGCGTCCTGGTGGTTTCTC
TGGCTGTCAATGGCACATTCGGGGCGGTGGCCAGTTTGGC
ACCAACTTTCTGGCTCTTTCTGCTCTTGCGGTTCTTCAGT
GGAGTCGGGGTCGGCGGCTCCATTCCTGTCATCTTCTCCT
ATTTTTCGGAGTTTCAGCCGTGTTTGCGGAGGGGGGCGAT
GATTAGTGCTCTGGCAACCTTCTGGATGGCTGGAAATATT
TTAGCTGCAGGCCGGACGTGAGATGGAGGCTTTGTCTGTG
TTCCAGAAGATATACAAACTGAACAACAGAGGTGCCACAA
AACCATTTCCTGTATCAGGGCTCATGATCAGACCTAAAGA
TGATGAAGTGAAAAACAGACCCAGCCACAGCAGCTCAAGA
TCACAGCGCTTCATCAATCAGCTCACACAGGCTCTGGTCC
CGCTGAAACAGCTGTTTGTCAGACCGCTGGCTTCCAGAAG
TGTCGTTCTAGTGATCATCTTTTTCTGCATCTCATTTGGG
TATTATGGGTTATGGATGTGGTTTCCGGAGCTTTTCAAGA
GGGCAGAAGATGGAGGTTCTCCATGTGCAAACATGTCTCG
AGCCCAAAACGCAGAGAACGAAAAGTGCTATCCAGTCAAA
ACCGCAGTGTACATGGAGGGGTTTATAACGGCGGCTTCAA
ACTTGCCAGGAAACATCTTCACTATTCTCCTCATGGACAG
AATCGGCGGGAAAATCCTTTTATCCGTTAGTTTGCTGGTG
TCCGGCGTGAGTGTGTTCGTCATTTACGTGGTGAAGACTA
AAACTCAGAGTCTGATCGTGTCCTGTGTGTTCAGTGGTGT
TTCTGTCATCTCCTGGAACGCTCTGGATGTCGTGGGGACA
GAACTTTACCCTACACAACTACGCTCCTCGGCTCTGGGGG
TCTTCACTGGAGTGGGTCGAGTGGCAGCCATCATGGGCAA
TGTGGTTTTCGGGCAGCTGGTGGACTCGAGCTGTGCCGTT
CCTCTGCTGATGGTGTGTGTGCTCCTGCTGGCGGGAGGAC
TGGCAGCTCTGTGGCTGCCTCAAACTAAACAGACTCAACT
CACATGATGCACACACACACACACATAGGCATTAAAAGAG
ATACAGTTGAAGTCAAAATGATTAGCCTTCCTGTAAATTA
TTTTGTCTTCAAATATTTCCCAAATGATGTTTAA

Segment Relationships
Protein Products
No data available
Supporting Sequences
Citations