Transcript

hmgb3a-201

ID

ZDB-TSCRIPT-090929-17509

Name

hmgb3a-201 Nomenclature History

Previous Names

hmgb3a-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

hmgb3a (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000123056 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000123056.4|gene_biotype:protein_coding|ENSDARG00000056725.8 transcript_biotype:nonsense_mediated_decay gene_symbol:hmgb3a cdna chromosome:GRCz11:7:25913258:25917071:1
GGCGAGATTTCAATCAAGTCAACAACACAGATCAAATCAC
AACACAAGAGAAGACTTCAGTAGACTTTGGTCCCTCTCTT
CTTACGAAAATGGCGAAAGGGGACCCCAGGAAGCCCAAGG
GCAAGATGTCTGCTTATGCCTATTTCGTTCAGACTTGCCG
AGAGGAGCACAAGAAGAAAAGTCCTGAGATTCCGGTCAGC
TTTTCGGAGTTCTCCAAAAGATGCTCCGGAAGGTGGAAGA
TTCATGTTTTGAGTGCAAAGGTGTCTTGATTTTGTTGCGC
AGGCGATGACTGATAAAGAGAAATCCCGGTTTGAAGACAT
GGCCAAACAAGATAAGGTGCGTTATGATCAGGAGATGATG
CATTACATGCCAGGAAAGAGAGGCAAAAAGAAGGATCCCA
ATGCCCCCAAGAGACCACCCTCTGGATTTTTCCTGTTCTG
CTCTGAACATCGTCCTCAAATCAAGGCTCAGTATCCCAGC
CTGGGCATCGGAGATGTGGCCAAAAAACTGGGCGAGATGT
GGAATGGCCTCACAGATGCTAACAAACAACCCTTCTTGAT
GAAAGCCAACAAGCTGAAGGACAAGTACC

OTTDART00000037078 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000037078|OTTDARG00000027537|ZDB-GENE-050428-1 hmgb3a|OTTDARP00000029724 hmgb3a-003 LG_ BX005022.7 Danio rerio protein_coding KNOWN, 589 bp
GGCGAGATTTCAATCAAGTCAACAACACAGATCAAATCAC
AACACAAGAGAAGACTTCAGTAGACTTTGGTCCCTCTCTT
CTTACGAAAATGGCGAAAGGGGACCCCAGGAAGCCCAAGG
GCAAGATGTCTGCTTATGCCTATTTCGTTCAGACTTGCCG
AGAGGAGCACAAGAAGAAAAGTCCTGAGATTCCGGTCAGC
TTTTCGGAGTTCTCCAAAAGATGCTCCGGAAGGTGGAAGA
TTCATGTTTTGAGTGCAAAGGTGTCTTGATTTTGTTGCGC
AGGCGATGACTGATAAAGAGAAATCCCGGTTTGAAGACAT
GGCCAAACAAGATAAGGTGCGTTATGATCAGGAGATGATG
CATTACATGCCAGGAAAGAGAGGCAAAAAGAAGGATCCCA
ATGCCCCCAAGAGACCACCCTCTGGATTTTTCCTGTTCTG
CTCTGAACATCGTCCTCAAATCAAGGCTCAGTATCCCAGC
CTGGGCATCGGAGATGTGGCCAAAAAACTGGGCGAGATGT
GGAATGGCCTCACAGATGCTAACAAACAACCCTTCTTGAT
GAAAGCCAACAAGCTGAAGGACAAGTACC

Related Transcripts

Transcripts related to hmgb3a

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	hmgb3a-201	Ensembl	589 nt
mRNA	hmgb3a-202 (1) Ensembl	Ensembl	1,709 nt	Select Tool ZFIN BLAST
mRNA	hmgb3a-204 (1) Ensembl	Ensembl	837 nt	Select Tool ZFIN BLAST
ncRNA	hmgb3a-002 (1) Ensembl	Ensembl	675 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations