PUBLICATION

A network of epigenetic regulators guides developmental haematopoiesis in vivo

Authors
Huang, H.T., Kathrein, K.L., Barton, A., Gitlin, Z., Huang, Y.H., Ward, T.P., Hofmann, O., Dibiase, A., Song, A., Tyekucheva, S., Hide, W., Zhou, Y., and Zon, L.I.
ID
ZDB-PUB-140101-31
Date
2013
Source
Nature cell biology   15(12): 1516-1525 (Journal)
Registered Authors
Song, Anhua, Zhou, Yi, Zon, Leonard I.
Keywords
none
MeSH Terms
  • Animals
  • Chromatin/genetics
  • Chromatin/metabolism
  • Chromatin Assembly and Disassembly
  • Epigenesis, Genetic
  • Erythroid Cells/metabolism
  • Gene Knockdown Techniques
  • Gene Regulatory Networks
  • Hematopoiesis/genetics*
  • Hematopoietic Stem Cells/physiology
  • Humans
  • Morpholinos/genetics
  • Protein Interaction Maps
  • Protein Subunits/genetics
  • Protein Subunits/metabolism
  • Reverse Genetics
  • Zebrafish/genetics*
  • Zebrafish Proteins/genetics*
  • Zebrafish Proteins/metabolism
(all 19)
PubMed
24240475 Full text @ Nat. Cell Biol.
Abstract

The initiation of cellular programs is orchestrated by key transcription factors and chromatin regulators that activate or inhibit target gene expression. To generate a compendium of chromatin factors that establish the epigenetic code during developmental haematopoiesis, a large-scale reverse genetic screen was conducted targeting orthologues of 425 human chromatin factors in zebrafish. A set of chromatin regulators was identified that target different stages of primitive and definitive blood formation, including factors not previously implicated in haematopoiesis. We identified 15 factors that regulate development of primitive erythroid progenitors and 29 factors that regulate development of definitive haematopoietic stem and progenitor cells. These chromatin factors are associated with SWI/SNF and ISWI chromatin remodelling, SET1 methyltransferase, CBP–p300–HBO1–NuA4 acetyltransferase, HDAC–NuRD deacetylase, and Polycomb repressive complexes. Our work provides a comprehensive view of how specific chromatin factors and their associated complexes play a major role in the establishment of haematopoietic cells in vivo.

Genes / Markers
Marker Marker Type Name
actl6aGENEactin-like 6A
actl6bGENEactin-like 6B
actr1bGENEactin related protein 1B
actr2aGENEactin related protein 2a
actr2bGENEactin related protein 2b
actr3GENEactin related protein 3
actr5GENEactin related protein 5
actr6GENEactin related protein 6
actr8GENEactin related protein 8
ahctf1GENEAT hook containing transcription factor 1
1 - 10 of 484
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Expression
Phenotype
Mutations / Transgenics
Allele Construct Type Affected Genomic Region
zdf1
    Point Mutation
    1 - 1 of 1
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    Human Disease / Model
    No data available
    Sequence Targeting Reagents
    Fish
    Antibodies
    No data available
    Orthology
    No data available
    Engineered Foreign Genes
    No data available
    Mapping