Gene

rxrba

ID

ZDB-GENE-980526-436

Name

retinoid x receptor, beta a

Symbol

rxrba Nomenclature History

Previous Names

rxrb (1)
rxre (1)
etID309733.19 (1)
fb93c09
NR2B2-A (1)
wu:fb93c09

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription, DNA-templated. Predicted to localize to RNA polymerase II transcription factor complex. Is expressed in several structures, including blastoderm; digestive system; eye; gonad; and tail bud. Orthologous to human RXRB (retinoid X receptor beta).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

16 figures from 7 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:66116 (1 image)
u29942 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rxrba Human Ortholog

No data available

Associated With rxrba Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000536	Nuclear hormone receptor, ligand-binding domain
Domain	IPR001628	Zinc finger, nuclear hormone receptor-type
Domain	IPR021780	Nuclear/hormone receptor activator site AF-1
Family	IPR000003	Retinoid X receptor/HNF4
Family	IPR001723	Nuclear hormone receptor
Family	IPR050274	Nuclear hormone receptor family NR2 subfamily
Homologous_superfamily	IPR013088	Zinc finger, NHR/GATA-type
Homologous_superfamily	IPR035500	Nuclear hormone receptor-like domain superfamily

Domain Details Per Protein

Protein	Length	Nuclear hormone receptor	Nuclear/hormone receptor activator site AF-1	Nuclear hormone receptor family NR2 subfamily	Nuclear hormone receptor, ligand-binding domain	Nuclear hormone receptor-like domain superfamily	Retinoid X receptor/HNF4	Zinc finger, NHR/GATA-type	Zinc finger, nuclear hormone receptor-type
UniProtKB:A0A8M2B632 InterPro	463
UniProtKB:A0A8M3ASC4 InterPro	472
UniProtKB:A0A8M2B5Y2 InterPro	449
UniProtKB:A0A8M3AK00 InterPro	466
UniProtKB:A0A8M3B3B9 InterPro	458
UniProtKB:A0A8M9PAS6 InterPro	447
UniProtKB:Q7SYN5 InterPro	471
UniProtKB:A0A8M3AVB4 InterPro	480
UniProtKB:Q1LV96 InterPro	438

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rxrba-201 (1) Ensembl	Ensembl	2,294 nt	Select Tool
mRNA	rxrba-202 (1) Ensembl	Ensembl	552 nt	Select Tool
mRNA	rxrba-204 (1) Ensembl	Ensembl	940 nt	Select Tool
mRNA	rxrba-205 (1) Ensembl	Ensembl	2,548 nt	Select Tool
mRNA	rxrba-206 (1) Ensembl	Ensembl	780 nt	Select Tool
mRNA	rxrba-207 (1) Ensembl	Ensembl	2,495 nt	Select Tool ZFIN BLAST
ncRNA	rxrba-002 (1) Ensembl	Ensembl	568 nt	Select Tool

Interactions and Pathways

SignaFish

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations