Gene

mhc2daa

ID

ZDB-GENE-980526-201

Name

major histocompatibility complex class II DAA gene

Symbol

mhc2daa Nomenclature History

Previous Names

DAA
mhc2a
mhc2d8.37a3 (1)
mhcdaa
a4
fj17g12
si:busm1-266f07.2
si:dz266f07.2
si:zfos-2070c2.4
wu:fa93a04
wu:fj17g12
zgc:103599
zgc:113853
zgc:113912

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

null

Genome Resources

Note

novel MHCII alpha chain protein

Comparative Information

Expression

All Expression Data

4 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:103599 (1 image)
eu793 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mhc2daa Human Ortholog

No data available

Associated With mhc2daa Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site
Domain	IPR001003	MHC class II, alpha chain, N-terminal
Domain	IPR003597	Immunoglobulin C1-set
Domain	IPR007110	Immunoglobulin-like domain
Family	IPR050160	Major Histocompatibility Complex/Immunoglobulin
Homologous_superfamily	IPR011162	MHC classes I/II-like antigen recognition protein
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014745	MHC class II, alpha/beta chain, N-terminal
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Immunoglobulin C1-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin/major histocompatibility complex, conserved site	Major Histocompatibility Complex/Immunoglobulin	MHC classes I/II-like antigen recognition protein	MHC class II, alpha/beta chain, N-terminal	MHC class II, alpha chain, N-terminal
UniProtKB:Q1MTC7 InterPro	236
UniProtKB:Q4KM20 InterPro	236

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	si:busm1-266f07.2-001 (1)	Havana		2,111 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	si:busm1-266f07.2-201 (1) Ensembl	Ensembl		1,590 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations