Gene
hmgn1b
- ID
- ZDB-GENE-141216-84
- Name
- high mobility group nucleosome binding domain 1b
- Symbol
- hmgn1b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 10 Mapping Details/Browsers
- Description
- Predicted to enable chromatin binding activity. Acts upstream of or within axonogenesis. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in several structures, including brain; heart; muscle; pectoral fin; and post-vent region.
- Genome Resources
- Note
-
- Comparative Information
-
- All Expression Data
- 7 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7159173 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- 5 figures from Gao et al., 2019
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR000079 | High mobility group protein HMGN |
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Domain Details Per Protein
| Protein | Length | High mobility group protein HMGN |
|---|---|---|
|
UniProtKB:A0A0R4IBX9
|
87 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch73-1a9.3-201
(1)
|
Ensembl | 1,398 nt |
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Interactions and Pathways
No data available
Plasmids
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-1A9 | ZFIN Curated Data | |
| Encodes | EST | IMAGE:7159173 | Thisse et al., 2004 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001386720 (1) | 1507 nt | ||
| Genomic | GenBank:CU633908 (1) | 121827 nt | ||
| Polypeptide | UniProtKB:A0A0R4IBX9 (1) | 87 aa |
No data available
- Tornini, V.A., Miao, L., Lee, H.J., Gerson, T., Dube, S.E., Schmidt, V., Kroll, F., Tang, Y., Du, K., Kuchroo, M., Vejnar, C.E., Bazzini, A.A., Krishnaswamy, S., Rihel, J., Giraldez, A.J. (2023) linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells. eLIFE. 12:
- Gao, T., Li, J., Li, N., Gao, Y., Yu, L., Zhuang, S., Zhao, Y., Dong, X. (2019) lncrps25 play an essential role in motor neuron development through controlling the expression of olig2 in zebrafish. Journal of Cellular Physiology. 235(4):3485-3496
- Wang, L., Ma, X., Xu, X., Zhang, Y. (2017) Systematic identification and characterization of cardiac long intergenic noncoding RNAs in zebrafish. Scientific Reports. 7:1250
- Bazzini, A.A., Johnstone, T.G., Christiano, R., Mackowiak, S.D., Obermayer, B., Fleming, E.S., Vejnar, C.E., Lee, M.T., Rajewsky, N., Walther, T.C., Giraldez, A.J. (2014) Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation. The EMBO journal. 33:981-93
- Ulitsky, I., Shkumatava, A., Jan, C.H., Sive, H., and Bartel, D.P. (2011) Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution. Cell. 147(7):1537-1550
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