Gene
magi2b
- ID
- ZDB-GENE-141211-6
- Name
- membrane associated guanylate kinase, WW and PDZ domain containing 2b
- Symbol
- magi2b Nomenclature History
- Previous Names
-
- si:ch211-127m7.3 (1)
- Type
- protein_coding_gene
- Location
- Chr: 25 Mapping Details/Browsers
- Description
- Predicted to enable molecular adaptor activity. Predicted to act upstream of or within signal transduction. Predicted to be located in bicellular tight junction and membrane. Human ortholog(s) of this gene implicated in nephrotic syndrome type 15. Orthologous to human MAGI2 (membrane associated guanylate kinase, WW and PDZ domain containing 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Jobst-Schwan et al., 2019
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-magi2b | (2) | |
| CRISPR2-magi2b | America et al., 2022 |
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Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| nephrotic syndrome type 15 | Alliance | Nephrotic syndrome, type 15 | 617609 |
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Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | PDZ domain | PDZ domain 6 | PDZ superfamily | P-loop containing nucleoside triphosphate hydrolase | WW domain | WW domain superfamily |
|---|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M9Q467
|
1146 | ||||||
|
UniProtKB:A0A8M9PEF7
|
1145 | ||||||
|
UniProtKB:A0A8M9PR83
|
697 | ||||||
|
UniProtKB:A0A8M9PYZ7
|
1171 | ||||||
|
UniProtKB:A0A8M9Q8C7
|
1152 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
magi2b-201
(1)
|
Ensembl | 4,794 nt | ||
| mRNA |
magi2b-202
(1)
|
Ensembl | 3,449 nt | ||
| mRNA |
magi2b-203
(1)
|
Ensembl | 9,099 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-127M7 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068219126 (1) | 5587 nt | ||
| Genomic | GenBank:BX324121 (1) | 181165 nt | ||
| Polypeptide | UniProtKB:A0A8M9PYZ7 (1) | 1171 aa |
- America, M., Bostaille, N., Eubelen, M., Martin, M., Stainier, D.Y.R., Vanhollebeke, B. (2022) An integrated model for Gpr124 function in Wnt7a/b signaling among vertebrates. Cell Reports. 39:110902
- Jobst-Schwan, T., Hoogstraten, C.A., Kolvenbach, C.M., Schmidt, J.M., Kolb, A., Eddy, K., Schneider, R., Ashraf, S., Widmeier, E., Majmundar, A.J., Hildebrandt, F. (2019) Corticosteroid treatment exacerbates nephrotic syndrome in a zebrafish model of magi2a knockout. Kidney International. 95:1079-1090
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37
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