Gene

gramd1bb

ID

ZDB-GENE-140106-106

Name

GRAM domain containing 1Bb

Symbol

gramd1bb Nomenclature History

Previous Names

zmp:0000001146 (1)

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Is expressed in hindbrain and otic vesicle. Orthologous to human GRAMD1B (GRAM domain containing 1B).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Wuttke et al., 2016

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Thyme et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With gramd1bb Human Ortholog

No data available

Associated With gramd1bb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004182	GRAM domain
Domain	IPR031968	VASt domain
Family	IPR051482	Cholesterol transport domain-containing protein
Homologous_superfamily	IPR011993	PH-like domain superfamily

Domain Details Per Protein

Protein	Length	Cholesterol transport domain-containing protein	GRAM domain	PH-like domain superfamily	VASt domain
UniProtKB:E7F9Y2 InterPro	748
UniProtKB:A0A8M9PMT0 InterPro	951
UniProtKB:A0A8M9PAM7 InterPro	936
UniProtKB:A0A8M9PMT5 InterPro	943
UniProtKB:A0A8M9PMT9 InterPro	923
UniProtKB:A0A8M9P1J5 InterPro	940
UniProtKB:A0A8M9PR30 InterPro	946
UniProtKB:A0A8M9PR35 InterPro	778
UniProtKB:A0A8M6Z2U8 InterPro	917
UniProtKB:A0A8M6YUD5 InterPro	928
UniProtKB:A0A8M9PG23 InterPro	782
UniProtKB:A0A8M6YTS1 InterPro	728
UniProtKB:A0A8M9PG20 InterPro	947
UniProtKB:A0A8M9P1K0 InterPro	916
UniProtKB:A0A8M6YW88 InterPro	924
UniProtKB:A0A8M6Z276 InterPro	935
UniProtKB:A0A8M9PAM4 InterPro	950
UniProtKB:A0A8M6YTR6 InterPro	943
UniProtKB:A0A8M9PAN1 InterPro	912

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	gramd1b-201 (1) Ensembl	Ensembl	2,691 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-202 (1) Ensembl	Ensembl	2,160 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-203 (1) Ensembl	Ensembl	2,229 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-204 (1) Ensembl	Ensembl	2,211 nt	Select Tool ZFIN BLAST
mRNA	gramd1b-205 (1) Ensembl	Ensembl	2,241 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations