Gene
hmgn1a
- ID
- ZDB-GENE-131120-172
- Name
- high mobility group nucleosome binding domain 1a
- Symbol
- hmgn1a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 15 Mapping Details/Browsers
- Description
- Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Lin et al., 2016
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| ya130 | Allele with one delins | Unknown | Unknown | CRISPR |
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Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR000079 | High mobility group protein HMGN |
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Domain Details Per Protein
| Protein | Length | High mobility group protein HMGN |
|---|---|---|
|
UniProtKB:A0A0R4IWN8
|
93 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch73-281n10.2-203
(1)
|
Ensembl | 1,407 nt | ||
| ncRNA |
si:ch73-281n10.2-002
(1)
|
Ensembl | 828 nt | ||
| ncRNA |
si:ch73-281n10.2-003
(1)
|
Ensembl | 1,064 nt | ||
| ncRNA |
si:ch73-281n10.2-004
(1)
|
Ensembl | 696 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-281N10 | ZFIN Curated Data | |
| Encodes | EST | fa95c02 | ||
| Encodes | EST | fb74d02 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001309644 (1) | 1435 nt | ||
| Genomic | GenBank:BX000987 (1) | 152072 nt | ||
| Polypeptide | UniProtKB:A0A0R4IWN8 (1) | 93 aa |
No data available
- Tornini, V.A., Miao, L., Lee, H.J., Gerson, T., Dube, S.E., Schmidt, V., Kroll, F., Tang, Y., Du, K., Kuchroo, M., Vejnar, C.E., Bazzini, A.A., Krishnaswamy, S., Rihel, J., Giraldez, A.J. (2023) linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells. eLIFE. 12:
- Lin, S.Y., Vollrath, M.A., Mangosing, S., Shen, J., Cardenas, E., Corey, D.P. (2016) The zebrafish pinball wizard gene encodes WRB, a tail-anchored-protein receptor essential for inner-ear hair cells and retinal photoreceptors. The Journal of physiology. 594(4):895-914
- Bazzini, A.A., Johnstone, T.G., Christiano, R., Mackowiak, S.D., Obermayer, B., Fleming, E.S., Vejnar, C.E., Lee, M.T., Rajewsky, N., Walther, T.C., Giraldez, A.J. (2014) Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation. The EMBO journal. 33:981-93
- Ton, C., Hwang, D.M., Dempsey, A.A., Tang, H.C., Yoon, J., Lim, M., Mably, J.D., Fishman, M.C., and Liew, C.C. (2000) Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library. Genome research. 10(12):1915-1927
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