Gene

efcc1

ID

ZDB-GENE-120813-3

Name

EF-hand and coiled-coil domain containing 1

Symbol

efcc1 Nomenclature History

Previous Names

ccdc48
si:dkey-57n24.4

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to cytosol. Is expressed in neuromast. Orthologous to human EFCC1 (EF-hand and coiled-coil domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Jiang et al., 2014

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With efcc1 Human Ortholog

No data available

Associated With efcc1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR002048	EF-hand domain
Family	IPR031601	Coiled-coil domain-containing protein 48
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	Coiled-coil domain-containing protein 48	EF-hand domain	EF-hand domain pair
UniProtKB:A0A0R4IP47 InterPro	641

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	efcc1-201 (1) Ensembl	Ensembl		2,450 nt	Select Tool
mRNA	efcc1-202 (1) Ensembl	Ensembl		891 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations