Gene
tnrc18
- ID
- ZDB-GENE-100326-1
- Name
- trinucleotide repeat containing 18
- Symbol
- tnrc18 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable chromatin binding activity. Is expressed in hypothalamus and telencephalon. Orthologous to human TNRC18 (trinucleotide repeat containing 18).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa1164 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa15126 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa20097 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33269 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa33270 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa33271 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | BAHCC1-like, Tudor domain | BAH domain-containing protein | Bromo adjacent homology (BAH) domain | Bromo adjacent homology (BAH) domain superfamily |
|---|---|---|---|---|---|
|
UniProtKB:A0A8M1RDF0
|
2924 | ||||
|
UniProtKB:A0A8M2BBN2
|
2925 | ||||
|
UniProtKB:X1WHA2
|
2936 | ||||
|
UniProtKB:A0A8M6YWT3
|
2931 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
tnrc18-201
(1)
|
Ensembl | 8,601 nt | ||
| mRNA |
tnrc18-202
(1)
|
Ensembl | 12,957 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-194I10 | ZFIN Curated Data | |
| Contained in | BAC | CH211-215A12 | ZFIN Curated Data | |
| Encodes | EST | wz13058 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_005164179 (1) | 11662 nt | ||
| Genomic | GenBank:AL928657 (1) | 187734 nt | ||
| Polypeptide | UniProtKB:X1WHA2 (1) | 2936 aa |
- Witjes, L., Van Troys, M., Vandekerckhove, J., Vandepoele, K., Ampe, C. (2019) A new evolutionary model for the vertebrate actin family including two novel groups. Molecular phylogenetics and evolution. 141:106632
- Diotel, N., Viales, R.R., Armant, O., März, M., Ferg, M., Rastegar, S., Strähle, U. (2015) Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. The Journal of comparative neurology. 523(8):1202-21
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Armant, O., März, M., Schmidt, R., Ferg, M., Diotel, N., Ertzer, R., Bryne, J.C., Yang, L., Baader, I., Reischl, M., Legradi, J., Mikut, R., Stemple, D., Ijcken, W.V., van der Sloot, A., Lenhard, B., Strähle, U., and Rastegar, S. (2013) Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Developmental Biology. 380(2):351-62
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