Gene

lingo4b

ID
ZDB-GENE-091214-3
Name
leucine rich repeat and Ig domain containing 4b
Symbol
lingo4b Nomenclature History
Previous Names
  • zgc:198379
Type
protein_coding_gene
Location
Chr: 16 Mapping Details/Browsers
Description
Predicted to localize to extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in glaucoma. Is expressed in Purkinje cell; cerebellum; granule cell; hindbrain; and optic tectum. Orthologous to several human genes including LINGO1 (leucine rich repeat and Ig domain containing 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Takeuchi et al., 2017
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With lingo4b Human Ortholog
No data available
Associated With lingo4b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000372 Leucine-rich repeat N-terminal domain
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin domain subtype
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013098 Immunoglobulin I-set
Family IPR050467 Leucine-rich repeat and fibronectin type-III domain-containing
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR032675 Leucine-rich repeat domain superfamily
Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
Repeat IPR001611 Leucine-rich repeat
Repeat IPR003591 Leucine-rich repeat, typical subtype
Repeat IPR026906 BspA-type LRR region
Domain Details Per Protein
Protein Length BspA-type LRR region Immunoglobulin domain subtype Immunoglobulin I-set Immunoglobulin-like domain Immunoglobulin-like domain superfamily Immunoglobulin-like fold Immunoglobulin subtype 2 Leucine-rich repeat Leucine-rich repeat and fibronectin type-III domain-containing Leucine-rich repeat domain superfamily Leucine-rich repeat N-terminal domain Leucine-rich repeat, typical subtype
UniProtKB:A3KH16 604
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA lingo4b-201 (1) Ensembl 1,889 nt
mRNA lingo4b-202 (1) Ensembl 3,031 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations