Gene

sdk2a

ID

ZDB-GENE-091008-1

Name

sidekick cell adhesion molecule 2a

Symbol

sdk2a Nomenclature History

Previous Names

si:ch211-148f13.1
zmp:0000000840

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from Galicia et al., 2018

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sdk2a Human Ortholog

No data available

Associated With sdk2a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin domain subtype	Immunoglobulin I-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2
UniProtKB:A0A8M9PQH9 InterPro	2217
UniProtKB:A0A8M9Q160 InterPro	2205
UniProtKB:A0A8M6YZA2 InterPro	2155
UniProtKB:A0A8M3AYB8 InterPro	2136
UniProtKB:A0A8M9QAK8 InterPro	2125
UniProtKB:A0A8M9PJI8 InterPro	2224
UniProtKB:A0A8M9Q5J9 InterPro	2106
UniProtKB:A0A8M3B1A0 InterPro	2148
UniProtKB:A0A8M3AQX4 InterPro	2132

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sdk2 (1 of many)-201 (1) Ensembl	Ensembl		5,381 nt	Select Tool
mRNA	sdk2a-201 (1) Ensembl	Ensembl		6,513 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations