Gene

sdk1b

ID

ZDB-GENE-090311-17

Name

sidekick cell adhesion molecule 1b

Symbol

sdk1b Nomenclature History

Previous Names

si:rp71-86k19.1 (1)
zgc:171522 (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to localize to synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK1 (sidekick cell adhesion molecule 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Galicia et al., 2018

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sdk1b Human Ortholog

No data available

Associated With sdk1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin domain subtype	Immunoglobulin I-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2
UniProtKB:A0A8M6Z668 InterPro	2283
UniProtKB:A0A8M9PWZ9 InterPro	1223
UniProtKB:A0A8M9Q823 InterPro	2291
UniProtKB:A0A8M6YY19 InterPro	2292

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sdk1b-201 (1) Ensembl	Ensembl	5,871 nt	Select Tool ZFIN BLAST
mRNA	sdk1b-202 (1) Ensembl	Ensembl	6,642 nt	Select Tool
mRNA	sdk1b-203 (1) Ensembl	Ensembl	935 nt	Select Tool
mRNA	sdk1b-204 (1) Ensembl	Ensembl	1,073 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations